Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   D7Y56_RS14825 Genome accession   NZ_CP038147
Coordinates   2991799..2993211 (+) Length   470 a.a.
NCBI ID   WP_014155558.1    Uniprot ID   A0ABZ1K4F5
Organism   Streptomyces sp. S501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2986799..2998211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS14805 (D7Y56_14805) - 2987026..2987850 (-) 825 WP_078494656.1 sugar phosphate isomerase/epimerase -
  D7Y56_RS14810 (D7Y56_14810) - 2987930..2988880 (-) 951 WP_030122898.1 Ppx/GppA phosphatase family protein -
  D7Y56_RS14815 (D7Y56_14815) - 2988913..2989755 (+) 843 WP_030880916.1 hypothetical protein -
  D7Y56_RS14820 (D7Y56_14820) - 2989835..2991655 (-) 1821 WP_134665403.1 hypothetical protein -
  D7Y56_RS14825 (D7Y56_14825) radA/sms 2991799..2993211 (+) 1413 WP_014155558.1 DNA repair protein RadA Machinery gene
  D7Y56_RS14830 (D7Y56_14830) disA 2993291..2994415 (+) 1125 WP_014155557.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  D7Y56_RS14835 (D7Y56_14835) - 2994494..2995480 (-) 987 WP_014155556.1 aldo/keto reductase -
  D7Y56_RS14840 (D7Y56_14840) - 2995526..2996296 (-) 771 WP_134665405.1 alpha/beta fold hydrolase -
  D7Y56_RS14845 (D7Y56_14845) - 2996293..2997531 (-) 1239 WP_051694774.1 cytochrome P450 -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49531.62 Da        Isoelectric Point: 8.2515

>NTDB_id=309631 D7Y56_RS14825 WP_014155558.1 2991799..2993211(+) (radA/sms) [Streptomyces sp. S501]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRPDGPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=309631 D7Y56_RS14825 WP_014155558.1 2991799..2993211(+) (radA/sms) [Streptomyces sp. S501]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGCACGACCGCCGCGG
GCCGGGTGTCCTCCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGCAGGCGACCGCGCGCTCGACCGGGGTCGGCGAG
CTGGACCGCGTGCTCGGCGGAGGCCTCGTGCCCGGTGCGGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCCGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTACGTCACGGCCGAGGAGTCCGCCAGCC
AGGTGCGGATGCGGGCCGACCGGATCCGGGCCATCAACGACCACCTGTACCTCGCCGCCGAGACCGACCTCTCGGCGGTC
CTGGGACATCTGGACGCGGTCAAGCCGTCCCTGCTCGTCCTCGACTCGGTGCAGACGGTGGCCTCCCCCGAGATCGACGG
CGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTGGCGGGCGCGCTCATCCGGGCCTCGAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCATGTGACCAAGGACGGCGCCATCGCGGGACCGCGGCTCCTGGAGCACCTCGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCACGCCTGCGGCTGGTGCGCGGCGTCAAGAACAGGTACGGGGCCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTGGCGGATCCGTCGGGGCTCTTCCTCACCCGCCGCGACGAGCCGGTCC
CCGGCACCTGCCTGACGGTCACCCTCGAGGGCAAGCGCCCACTCGTCGCCGAGGTGCAGGCACTGACGGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTCGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGTGCGACGGTGGGCGGCGTGAAGCTCACGGAACCGGCCGCGGATC
TCGCGATCGCCCTGGCACTGGCCAGTGCGGCCAGTGACACACCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGT
CTCGCCGGGGAGGTCAGGAGGGTCACCGGGGTCCAGCGCAGGCTGGCGGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCCGGGCAGGTCCCGGCCGGCATGAAGGTCACGGAAGTGGCCGACATGGGCGACGCCCTGAGAGTCC
TCCCCCGCCGGTCTCGGCCGGACGGACCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

41.722

96.383

0.402
  radA Streptococcus pneumoniae D39

41.722

96.383

0.402
  radA Streptococcus pneumoniae R6

41.722

96.383

0.402
  radA Streptococcus pneumoniae TIGR4

41.722

96.383

0.402
  radA Streptococcus mitis SK321

43.124

91.277

0.394
  radA Streptococcus mitis NCTC 12261

43.124

91.277

0.394