Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D7Y56_RS10515 Genome accession   NZ_CP038147
Coordinates   1998768..2000690 (+) Length   640 a.a.
NCBI ID   WP_014156405.1    Uniprot ID   A0ABZ1K412
Organism   Streptomyces sp. S501     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1993768..2005690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS10480 (D7Y56_10480) - 1993851..1994084 (-) 234 WP_015577068.1 type II toxin-antitoxin system VapB family antitoxin -
  D7Y56_RS10500 (D7Y56_10500) - 1995068..1995370 (+) 303 WP_014156408.1 YtxH domain-containing protein -
  D7Y56_RS10505 (D7Y56_10505) - 1995453..1996898 (+) 1446 WP_014156407.1 FGGY family carbohydrate kinase -
  D7Y56_RS10510 (D7Y56_10510) rcrP 1997035..1998768 (+) 1734 WP_014156406.1 ABC transporter ATP-binding protein Regulator
  D7Y56_RS10515 (D7Y56_10515) rcrQ 1998768..2000690 (+) 1923 WP_014156405.1 ABC transporter ATP-binding protein Regulator
  D7Y56_RS10520 (D7Y56_10520) - 2000770..2001846 (-) 1077 WP_014156404.1 RNA polymerase sigma factor -
  D7Y56_RS10525 (D7Y56_10525) dnaG 2002023..2003930 (-) 1908 WP_014156403.1 DNA primase -
  D7Y56_RS10530 (D7Y56_10530) - 2004026..2005285 (-) 1260 WP_134665016.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69209.61 Da        Isoelectric Point: 4.9850

>NTDB_id=309620 D7Y56_RS10515 WP_014156405.1 1998768..2000690(+) (rcrQ) [Streptomyces sp. S501]
MAGPGGRMMMGPTERSMDFKGSGKRLLRRFSKEKASLYLMLGAVALSVALSVVGPKILGAATDLIFAGVVGRQMPDGTTK
EQAIESLRAKGDDGLADMLTGVDFTPGTGIDFGAVGQVLLAVLVVYVGAGLLMLVSTRVSIRVINRVVFQLREDLQTKLA
RLPLSYFDRQQRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTIPLSVFVAARVGKRS
QPHFVAQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFALLDAEEQAPDPDPAERPEELRGSVALEHV
SFRYDPDKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDAARMTRDELRSGIGMVLQDTWL
FGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAEGAYARLYAAQFAQALAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=309620 D7Y56_RS10515 WP_014156405.1 1998768..2000690(+) (rcrQ) [Streptomyces sp. S501]
ATGGCAGGGCCGGGCGGACGGATGATGATGGGGCCCACCGAGCGCTCCATGGACTTCAAGGGATCCGGGAAGCGGCTGCT
GAGGAGGTTCAGCAAGGAGAAGGCGTCGCTGTACCTGATGCTGGGTGCCGTGGCGCTGAGCGTGGCGCTCTCCGTCGTGG
GGCCCAAGATCCTCGGTGCGGCGACCGACCTGATCTTCGCGGGTGTCGTCGGACGGCAGATGCCGGACGGCACCACCAAG
GAACAGGCCATCGAGAGCCTGCGCGCGAAGGGCGACGACGGGCTCGCCGACATGCTGACCGGGGTGGACTTCACGCCGGG
CACCGGCATCGACTTCGGCGCCGTGGGACAGGTCCTGCTCGCGGTGCTGGTGGTCTACGTCGGCGCGGGGCTGCTGATGC
TGGTGTCGACCCGGGTGTCGATCCGGGTGATCAACCGGGTCGTCTTCCAGCTGCGCGAGGACCTGCAGACCAAGCTGGCA
CGGCTCCCGCTCTCGTACTTCGACCGGCAGCAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACATCTC
CCAGACGATGCAGCAGACGATGGGCCAGCTGATCAACTCCCTGCTGACCATCGTCGGCGTGCTGATCATGATGTTCTGGA
TCTCGCCCCTGCTGGCCCTGGTCGCGCTGGTGACGATCCCGCTGTCGGTGTTCGTCGCGGCGCGGGTCGGCAAGCGGTCG
CAGCCGCACTTCGTGGCGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACACCCT
GGTGAAGGTCTTCGGTCGGCAGGAGGAGTCCGCCCGGGACTTCGCCGAGCAGAACGAGGCCTTGTACGAGGCGGGCTTCA
AGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTCGCGGTCGTC
GGCGGGCTGCGGGTGGCGTCGGGTGCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGGATCGCGTCGGCGGAGCGGGTCTTCGCCCTGCTGG
ACGCCGAGGAGCAGGCGCCCGACCCGGATCCCGCCGAGCGGCCCGAGGAGCTGCGCGGCAGCGTCGCGCTGGAGCACGTG
TCCTTCCGGTACGACCCGGACAAGCCGCTCATCGAGGATCTCTCGCTGAGCGTGGAGCCCGGCCACACGGTCGCCATCGT
GGGGCCGACCGGTGCCGGCAAGACGACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCACCC
TCGACGGGGTCGACGCGGCCCGGATGACGCGCGACGAACTCCGCTCGGGCATAGGGATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGGAGAACATCGCCTACGGCGCCTCGCGCGAGGTGACCCGGGAGGAGATCGAGGAAGCGGCGCG
TGCGGCCCACGCCGACCGTTTCGTCCGTACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGCGCCGGGGTGA
GCGCGGGCGAGAAGCAGCTGATCACGATCGCACGGGCATTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCCACC
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTGGCCCACGGCCGTACGAGCTTCGTGAT
CGCTCACCGGCTCTCCACCATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGGGCACGC
ACGACGAGCTGCTGGCGGCCGAGGGGGCCTACGCCCGGCTGTACGCGGCCCAGTTCGCCCAGGCGCTGGCCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(56-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.23

85.469

0.361

Multiple sequence alignment