Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   D7Y56_RS10510 Genome accession   NZ_CP038147
Coordinates   1997035..1998768 (+) Length   577 a.a.
NCBI ID   WP_014156406.1    Uniprot ID   A0ABZ1K0B7
Organism   Streptomyces sp. S501     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1992035..2003768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS10475 (D7Y56_10475) - 1993447..1993854 (-) 408 WP_015577067.1 PIN domain nuclease -
  D7Y56_RS10480 (D7Y56_10480) - 1993851..1994084 (-) 234 WP_015577068.1 type II toxin-antitoxin system VapB family antitoxin -
  D7Y56_RS10500 (D7Y56_10500) - 1995068..1995370 (+) 303 WP_014156408.1 YtxH domain-containing protein -
  D7Y56_RS10505 (D7Y56_10505) - 1995453..1996898 (+) 1446 WP_014156407.1 FGGY family carbohydrate kinase -
  D7Y56_RS10510 (D7Y56_10510) rcrP 1997035..1998768 (+) 1734 WP_014156406.1 ABC transporter ATP-binding protein Regulator
  D7Y56_RS10515 (D7Y56_10515) rcrQ 1998768..2000690 (+) 1923 WP_014156405.1 ABC transporter ATP-binding protein Regulator
  D7Y56_RS10520 (D7Y56_10520) - 2000770..2001846 (-) 1077 WP_014156404.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62499.61 Da        Isoelectric Point: 5.5432

>NTDB_id=309619 D7Y56_RS10510 WP_014156406.1 1997035..1998768(+) (rcrP) [Streptomyces sp. S501]
MLIKLLRTYLGPYRRPIVLLVLLQLLQTCASLYLPSLNADIIDNGVVRGDTGYILEFGGVMIAVSVLQIVCNIGAVYFGA
RTASALGRDVRASVFGRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGVSVSLIVRRMRPLFRTMQVRLDAVNRVLREQITGNRVIRAFIRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKVLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGADVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEQLWHALEVAQAKDFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQEPEIYLFDDSFSALDYATDAALRGALSQETAGATVVIVAQRVSTIRDADRILVLDEGRVVGTGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=309619 D7Y56_RS10510 WP_014156406.1 1997035..1998768(+) (rcrP) [Streptomyces sp. S501]
GTGCTCATAAAACTCCTGCGGACCTATCTGGGCCCGTACAGACGTCCCATCGTGCTGCTGGTGCTGCTCCAGCTCCTGCA
GACCTGCGCCAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTGCGGGGTGACACGGGTTACA
TCCTGGAGTTCGGCGGCGTGATGATCGCCGTCAGCGTCCTCCAGATCGTCTGCAACATCGGGGCGGTCTACTTCGGGGCC
CGGACGGCGTCCGCGCTCGGGCGGGACGTGCGTGCGTCGGTCTTCGGCCGGGTGCAGTCGTTCTCCGCGCGCGAGGTGGG
GCGGTTCGGGGCCCCTTCGCTGATCACCCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTCGTCCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGTTGTCGGCGGTG
CTGCTGGCCGTACTGCCCGTCCTCGGTGTCTCGGTGAGCCTGATCGTGCGGCGGATGCGGCCTCTGTTCCGCACGATGCA
GGTACGGCTGGACGCGGTCAACCGGGTGCTGCGTGAGCAGATCACCGGTAACCGCGTCATCCGCGCCTTCATCCGTGACG
GCTACGAGGAGGAGCGCTTCCGGGGCGCCAACACGGAACTGACCGACGTCGCGCTGTCGACGGGGCGGCTGATGGCCCTC
ATGTTCCCGACGGTGATGACGGTCGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTCACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGTGTGGTGCCG
CCCACCGCTCCGGTGACGAAGGTGCTGAAGCACGGGCATCTGGAGATACGGGGCGCGGAGTTCCGCTTCCCGGGCGCCGA
GGAGCCGGTGCTGCGCTCGGTCGATCTGGTGGCCCGGCCGGGGGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGACGTCCTGGTCGACGGTGCGGATGTGCGG
ACGCTGGATCCCGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGACCGACGAGCAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGGAGCGGCTGGAGCACGGCCTGGACGCGCCGATCGCGCAGGGCGGGACGAACGTCTCCGGCGGTCAGCGGCAGCGTCTC
GCGATCGCGCGGACGCTGGTGCAGGAGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCTCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGGGCGCTGTCCCAGGAGACGGCGGGGGCGACCGTGGTGATCGTGGCCCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGACGGGCAGCCATCACGAGCTCATGGAAGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.48

100

0.409

Multiple sequence alignment