Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   DD547_RS00180 Genome accession   NZ_CP031670
Coordinates   38966..40315 (-) Length   449 a.a.
NCBI ID   WP_061657934.1    Uniprot ID   M1XI66
Organism   Staphylococcus aureus strain 64     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33966..45315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD547_RS15220 (DD547_00047) - 33992..35236 (+) 1245 WP_031903863.1 restriction endonuclease subunit S -
  DD547_RS00155 - 35342..35565 (-) 224 Protein_26 hypothetical protein -
  DD547_RS00160 (DD547_00048) - 35579..36088 (-) 510 WP_031903864.1 DUF1643 domain-containing protein -
  DD547_RS00165 (DD547_00049) - 36103..36414 (-) 312 WP_031903865.1 DUF960 family protein -
  DD547_RS00170 (DD547_00051) - 36501..36851 (-) 351 WP_031903866.1 SAUGI family uracil-DNA glycosylase inhibitor -
  DD547_RS00175 (DD547_00052) ccrB 37317..38945 (-) 1629 WP_061657937.1 recombinase family protein Machinery gene
  DD547_RS00180 (DD547_00053) ccrA 38966..40315 (-) 1350 WP_061657934.1 recombinase family protein Machinery gene
  DD547_RS00185 (DD547_00054) - 40503..42272 (-) 1770 WP_000020211.1 DUF927 domain-containing protein -
  DD547_RS00190 (DD547_00055) - 42272..42568 (-) 297 WP_000220590.1 single-stranded DNA-binding protein -
  DD547_RS00195 (DD547_00056) - 42741..44255 (-) 1515 WP_117225177.1 hypothetical protein -
  DD547_RS00200 (DD547_00057) - 44395..45099 (+) 705 WP_016170663.1 FRG domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52426.82 Da        Isoelectric Point: 9.8746

>NTDB_id=309608 DD547_RS00180 WP_061657934.1 38966..40315(-) (ccrA) [Staphylococcus aureus strain 64]
MKQAIGYLRQSTTKQQSLAAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQTYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKARQGKLITTHAPFGYHYH
NGTFTIDTVKSPTVKAVFNYYLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKSDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQGKIDADTFREQSQSFRQQSNPITSINAHQIRKVFQ
NIIQQRFTLNMLYPYIDEIHITKNKTLTGIYFKNEPLNIVNQTAQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=309608 DD547_RS00180 WP_061657934.1 38966..40315(-) (ccrA) [Staphylococcus aureus strain 64]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGC
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTATTATGTTGCTATCGTCTAAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAGCTCATGAAATTATGTCAAACGTATCATGTTCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAGACAAGGTAAACTAATTACAACACATGCTCCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAGTCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAACTTCATTAATCGCAAGCCTTATCAAGTGCGTAATATTATCCTCA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATGACTGTCCGCAAATCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAATCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGATACGTTCA
GAGAACAATCGCAATCATTTCGACAACAGTCAAACCCTATAACATCAATCAATGCACATCAAATTCGAAAGGTTTTTCAA
AATATCATACAACAACGTTTCACGTTAAACATGTTGTACCCTTACATTGATGAAATTCATATTACCAAAAATAAAACACT
TACGGGTATCTATTTCAAAAATGAGCCCTTAAACATCGTCAATCAAACGGCGCAATCATCGATTGCTTAA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(170-249)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

92.205

100

0.922
  ccrA Staphylococcus aureus N315

76.392

100

0.764

Multiple sequence alignment