Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E3N82_RS17425 Genome accession   NZ_CP038138
Coordinates   3619992..3620468 (-) Length   158 a.a.
NCBI ID   WP_001186742.1    Uniprot ID   -
Organism   Escherichia coli strain G3X16-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3614992..3625468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3N82_RS17385 - 3615100..3616419 (+) 1320 WP_000144688.1 site-specific integrase -
  E3N82_RS17390 - 3616512..3617360 (-) 849 WP_039025884.1 DUF4942 domain-containing protein -
  E3N82_RS17395 - 3617457..3617654 (-) 198 WP_000772024.1 DUF957 domain-containing protein -
  E3N82_RS17400 - 3617674..3618162 (-) 489 Protein_3392 DUF5983 family protein -
  E3N82_RS17405 cbtA 3618159..3618536 (-) 378 WP_039025883.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  E3N82_RS17410 cbeA 3618625..3618993 (-) 369 WP_039025882.1 type IV toxin-antitoxin system YeeU family antitoxin -
  E3N82_RS17415 - 3619043..3619687 (-) 645 WP_039025881.1 hypothetical protein -
  E3N82_RS17420 yeeT 3619702..3619923 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  E3N82_RS17425 radC 3619992..3620468 (-) 477 WP_001186742.1 RadC family protein Machinery gene
  E3N82_RS17430 - 3620483..3620968 (-) 486 WP_063073032.1 antirestriction protein -
  E3N82_RS17435 - 3621059..3621877 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  E3N82_RS17445 - 3622205..3625051 (-) 2847 WP_063073033.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=309580 E3N82_RS17425 WP_001186742.1 3619992..3620468(-) (radC) [Escherichia coli strain G3X16-2]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=309580 E3N82_RS17425 WP_001186742.1 3619992..3620468(-) (radC) [Escherichia coli strain G3X16-2]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCCGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

60.577

65.823

0.399