Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E3N82_RS16445 Genome accession   NZ_CP038138
Coordinates   3413543..3414148 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain G3X16-2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3408543..3419148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3N82_RS16420 aes 3408580..3409539 (+) 960 WP_000801846.1 acetyl esterase -
  E3N82_RS16425 hemH 3409536..3410498 (-) 963 WP_001250088.1 ferrochelatase -
  E3N82_RS16435 adk 3410734..3411378 (-) 645 WP_001220233.1 adenylate kinase -
  E3N82_RS16440 htpG 3411559..3413433 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  E3N82_RS16445 recR 3413543..3414148 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E3N82_RS16450 ybaB 3414148..3414477 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E3N82_RS16455 dnaX 3414530..3416461 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  E3N82_RS16460 apt 3416590..3417141 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  E3N82_RS16465 ybaN 3417294..3417671 (-) 378 WP_001188905.1 DUF454 family protein -
  E3N82_RS16470 priC 3417741..3418268 (+) 528 WP_001402074.1 primosomal replication protein N'' -
  E3N82_RS16475 rsmS 3418282..3418443 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  E3N82_RS25905 - 3418496..3418594 (-) 99 Protein_3207 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=309575 E3N82_RS16445 WP_001195025.1 3413543..3414148(-) (recR) [Escherichia coli strain G3X16-2]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=309575 E3N82_RS16445 WP_001195025.1 3413543..3414148(-) (recR) [Escherichia coli strain G3X16-2]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment