Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E3N82_RS14070 Genome accession   NZ_CP038138
Coordinates   2898543..2899172 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain G3X16-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2893543..2904172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3N82_RS14055 helD 2893785..2895839 (-) 2055 WP_000420536.1 DNA helicase IV -
  E3N82_RS14060 yccF 2895962..2896408 (+) 447 WP_001261235.1 YccF domain-containing protein -
  E3N82_RS14065 yccS 2896418..2898580 (+) 2163 WP_073520158.1 YccS family putative transporter -
  E3N82_RS14070 sxy/tfoX 2898543..2899172 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E3N82_RS14075 sulA 2899391..2899900 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E3N82_RS14080 ompA 2900257..2901309 (+) 1053 WP_000750419.1 porin OmpA -
  E3N82_RS14085 matP 2901384..2901836 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  E3N82_RS14090 ycbZ 2902022..2903782 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=309568 E3N82_RS14070 WP_000839153.1 2898543..2899172(-) (sxy/tfoX) [Escherichia coli strain G3X16-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=309568 E3N82_RS14070 WP_000839153.1 2898543..2899172(-) (sxy/tfoX) [Escherichia coli strain G3X16-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment