Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3N82_RS05770 Genome accession   NZ_CP038138
Coordinates   1179105..1179620 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain G3X16-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174105..1184620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3N82_RS05725 csrA 1174557..1174742 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  E3N82_RS05755 yqaB 1176335..1176901 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E3N82_RS05760 yqaA 1176898..1177326 (+) 429 WP_001287454.1 YqaA family protein -
  E3N82_RS05765 gshA 1177399..1178955 (+) 1557 WP_001402441.1 glutamate--cysteine ligase -
  E3N82_RS05770 luxS 1179105..1179620 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  E3N82_RS05775 emrB 1179684..1181222 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  E3N82_RS05780 emrA 1181239..1182411 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E3N82_RS05785 emrR 1182538..1183068 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E3N82_RS05790 ygaH 1183159..1183494 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  E3N82_RS05795 ygaZ 1183484..1184221 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=309546 E3N82_RS05770 WP_001130210.1 1179105..1179620(+) (luxS) [Escherichia coli strain G3X16-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=309546 E3N82_RS05770 WP_001130210.1 1179105..1179620(+) (luxS) [Escherichia coli strain G3X16-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment