Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E3N82_RS00455 Genome accession   NZ_CP038138
Coordinates   89414..90082 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain G3X16-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 84414..95082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3N82_RS00425 yicC 84433..85296 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  E3N82_RS00430 rph 85423..86139 (+) 717 WP_001247089.1 ribonuclease PH -
  E3N82_RS00435 pyrE 86205..86846 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  E3N82_RS00440 slmA 86883..87479 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  E3N82_RS00445 dut 87586..88044 (-) 459 WP_000976070.1 dUTP diphosphatase -
  E3N82_RS00450 coaBC 88022..89242 (-) 1221 WP_001402644.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  E3N82_RS00455 radC 89414..90082 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  E3N82_RS00460 rpmB 90299..90535 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  E3N82_RS00465 rpmG 90556..90723 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  E3N82_RS00470 mutM 90821..91630 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  E3N82_RS00475 coaD 91669..92148 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  E3N82_RS00480 waaA 92156..93433 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  E3N82_RS00485 rfaQ 93846..94904 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=309524 E3N82_RS00455 WP_001298959.1 89414..90082(+) (radC) [Escherichia coli strain G3X16-2]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=309524 E3N82_RS00455 WP_001298959.1 89414..90082(+) (radC) [Escherichia coli strain G3X16-2]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496