Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   E3U39_RS20590 Genome accession   NZ_CP038028
Coordinates   4018812..4020590 (+) Length   592 a.a.
NCBI ID   WP_053573306.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4013812..4025590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS20535 (E3U39_20535) - 4014118..4014321 (+) 204 WP_007407979.1 DUF6501 family protein -
  E3U39_RS20540 (E3U39_20540) - 4014387..4014527 (+) 141 WP_003153781.1 DUF4025 domain-containing protein -
  E3U39_RS20545 (E3U39_20545) - 4014821..4015165 (+) 345 WP_003153783.1 PH domain-containing protein -
  E3U39_RS20550 (E3U39_20550) - 4015210..4015443 (-) 234 WP_003153785.1 hypothetical protein -
  E3U39_RS20555 (E3U39_20555) - 4015440..4015712 (-) 273 WP_014418114.1 hypothetical protein -
  E3U39_RS20560 (E3U39_20560) - 4015783..4016265 (+) 483 WP_003153787.1 Hsp20/alpha crystallin family protein -
  E3U39_RS20565 (E3U39_20565) - 4016252..4016485 (-) 234 WP_033574658.1 hypothetical protein -
  E3U39_RS20570 (E3U39_20570) - 4016578..4016958 (+) 381 WP_033574657.1 spore germination protein GerPC -
  E3U39_RS20575 (E3U39_20575) - 4017041..4017532 (+) 492 WP_015417624.1 TraR/DksA C4-type zinc finger protein -
  E3U39_RS20580 (E3U39_20580) - 4017677..4018303 (+) 627 WP_003153791.1 FMN-dependent NADH-azoreductase -
  E3U39_RS20590 (E3U39_20590) recQ 4018812..4020590 (+) 1779 WP_053573306.1 DNA helicase RecQ Machinery gene
  E3U39_RS20595 (E3U39_20595) - 4020826..4021695 (+) 870 WP_007407985.1 3D domain-containing protein -
  E3U39_RS20600 (E3U39_20600) - 4021858..4022250 (+) 393 WP_053573311.1 hypothetical protein -
  E3U39_RS20605 (E3U39_20605) - 4022282..4023259 (-) 978 WP_053573307.1 S66 peptidase family protein -
  E3U39_RS20610 (E3U39_20610) - 4023324..4023821 (-) 498 WP_040238046.1 N-acetyltransferase -
  E3U39_RS20615 (E3U39_20615) - 4024016..4024801 (+) 786 WP_053573308.1 VLRF1 family aeRF1-type release factor -
  E3U39_RS20620 (E3U39_20620) - 4024946..4025482 (+) 537 WP_007407990.1 DUF420 domain-containing protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66896.43 Da        Isoelectric Point: 6.5082

>NTDB_id=309517 E3U39_RS20590 WP_053573306.1 4018812..4020590(+) (recQ) [Bacillus amyloliquefaciens strain FS1092]
MLEKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKHSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDSLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGENEAEACGACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDQ
DLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=309517 E3U39_RS20590 WP_053573306.1 4018812..4020590(+) (recQ) [Bacillus amyloliquefaciens strain FS1092]
ATGCTGGAGAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTACGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTGCTGTTTGAAGGAACCACAATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATCAACAGTACCCAGACAAGCCGTGACATTCATGAGCGCCTGACCGGTTTGAAGCAAGG
GGCTTACCGGCTCTTTTACATCACACCGGAGCGTTTGACTTCTTCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCAATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATC
CTTTTTAATGAACTAAAAGAACCGCCCGTCATCATCGCATTAACGGCGACGGCTACGCCTGAGGTTCATGATGATATCTG
CAAACAGCTTCATATTAAGAAAGAACAAACTGTATATACCGGTTTTGCCAGAGAGAACTTAACGTTTAAAGTAGTAAAGG
GCGAAAACAAAGACCGGTTTATCGAGCGGTATCTGGAAAAAAATAAACACGAAGCCGGCATTATATATACAGCGACAAGA
AAAGAAACCGACCGTTTATATGAGAAATTAAAACACAGCGGCATCAATGCCGGCCGTTATCACGGCGGATTGGCGGATGA
TGACAGAAAAGACCAGCAGGAGCGGTTTCTTAACGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAA
TCGATAAGAGCAACATCAGGTTCGTTTTACACGCGCAGATTCCGAAAGATATGGAGAGCTATTACCAGGAAGCCGGACGG
GCCGGGCGCGACAGTCTTAACAGCGAGTGTGTGCTCTTGTTTTCGCCGCAGGATATTATGGTGCAGCGTTTTTTAATAGA
CCAATCGGCCGCTGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGAAGCTTGCGGAGCATGCGGCAATTGCACTGAT
ACAAGGACCGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCATGCATCATCAGAATGAATGAGCGCTTCGGAAA
AACGATGGTGGCGCAGGTGCTTAGCGGGTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACTTACG
GCATTATGAAGCATCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTCCTTATTTCAGATGAATATATCAGAATGGCG
GACGGCACATTTCCGACGCTAATGGTCACCCAAAAAGGCAGGGACGTTCTGCTTGGAAAAAGCGCAGTCGCGAGAAAAGA
AGCCTTACAGGCCGCCGCCGTTACCGAAAATGATGAATTATTTGAGCTTCTCCGGCGTCTCCGCAAAGAAATTGCAGCTG
AACAGGGTGTGCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAG
GATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAAAGATTGAAATACGGAGCGGTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(404-508)

Helicase conserved C-terminal domain (Helicase_C)

(217-323)

HRDC domain (HRDC)

(519-584)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

DEAD/DEAH box helicase (DEAD)

(21-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.095

100

0.821