Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   E3U39_RS14995 Genome accession   NZ_CP038028
Coordinates   2992433..2993128 (+) Length   231 a.a.
NCBI ID   WP_014418686.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987433..2998128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS14975 (E3U39_14975) - 2988355..2989341 (+) 987 WP_039254158.1 ABC transporter permease -
  E3U39_RS14980 (E3U39_14980) - 2989378..2990358 (+) 981 WP_031378723.1 hypothetical protein -
  E3U39_RS14985 (E3U39_14985) - 2990374..2991069 (+) 696 WP_007408816.1 ABC transporter ATP-binding protein -
  E3U39_RS14990 (E3U39_14990) - 2991059..2992369 (+) 1311 WP_031378724.1 FtsX-like permease family protein -
  E3U39_RS14995 (E3U39_14995) braR 2992433..2993128 (+) 696 WP_014418686.1 response regulator transcription factor Regulator
  E3U39_RS15000 (E3U39_15000) - 2993121..2994125 (+) 1005 WP_053573101.1 sensor histidine kinase -
  E3U39_RS15005 (E3U39_15005) - 2994228..2994983 (+) 756 WP_031378726.1 ABC transporter ATP-binding protein -
  E3U39_RS15010 (E3U39_15010) - 2994980..2996920 (+) 1941 WP_031378727.1 ABC transporter permease -
  E3U39_RS15015 (E3U39_15015) - 2997028..2997738 (+) 711 WP_053573102.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26839.08 Da        Isoelectric Point: 7.1196

>NTDB_id=309480 E3U39_RS14995 WP_014418686.1 2992433..2993128(+) (braR) [Bacillus amyloliquefaciens strain FS1092]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFSEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=309480 E3U39_RS14995 WP_014418686.1 2992433..2993128(+) (braR) [Bacillus amyloliquefaciens strain FS1092]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCATGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAAGATTTCAGCCGGGTCATCCGGGAGTTTTCTGAAATCAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCATCAATACGGCACAGAACCTGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAGCTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCAGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385