Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DZ899_RS25730 Genome accession   NZ_CP031660
Coordinates   5400764..5402125 (-) Length   453 a.a.
NCBI ID   WP_017002524.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PABL017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5395764..5407125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZ899_RS25705 (DZ899_25705) yjiA 5395951..5396955 (-) 1005 WP_003094852.1 GTPase -
  DZ899_RS25710 (DZ899_25710) - 5397015..5397218 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  DZ899_RS25715 (DZ899_25715) - 5397267..5399333 (-) 2067 WP_003094859.1 carbon starvation CstA family protein -
  DZ899_RS25720 (DZ899_25720) - 5399671..5400177 (-) 507 WP_003094862.1 DUF3015 domain-containing protein -
  DZ899_RS25725 (DZ899_25725) mapZ 5400380..5400757 (+) 378 WP_003094864.1 cyclic di-GMP-binding protein MapZ -
  DZ899_RS25730 (DZ899_25730) radA 5400764..5402125 (-) 1362 WP_017002524.1 DNA repair protein RadA Machinery gene
  DZ899_RS25735 (DZ899_25735) - 5402235..5402669 (+) 435 WP_003112796.1 CopD family protein -
  DZ899_RS25740 (DZ899_25740) - 5402731..5402985 (-) 255 WP_003104887.1 YdcH family protein -
  DZ899_RS25745 (DZ899_25745) - 5403060..5403611 (-) 552 WP_031772008.1 ankyrin repeat domain-containing protein -
  DZ899_RS25750 (DZ899_25750) katB 5403665..5405206 (-) 1542 WP_003094881.1 catalase KatB -
  DZ899_RS31175 - 5405203..5405691 (-) 489 WP_169433242.1 hypothetical protein -
  DZ899_RS25760 (DZ899_25760) mscL 5405734..5406147 (+) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  DZ899_RS25765 (DZ899_25765) - 5406252..5407028 (-) 777 WP_003456796.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48380.78 Da        Isoelectric Point: 6.8357

>NTDB_id=309472 DZ899_RS25730 WP_017002524.1 5400764..5402125(-) (radA) [Pseudomonas aeruginosa strain PABL017]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=309472 DZ899_RS25730 WP_017002524.1 5400764..5402125(-) (radA) [Pseudomonas aeruginosa strain PABL017]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCGCCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGAGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTTCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGACCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGTGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

100

0.486
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466

Multiple sequence alignment