Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   E3U39_RS13300 Genome accession   NZ_CP038028
Coordinates   2689448..2690080 (+) Length   210 a.a.
NCBI ID   WP_007410060.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2684448..2695080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS13275 (E3U39_13275) - 2685587..2685967 (+) 381 WP_007410056.1 protein liaI -
  E3U39_RS13280 (E3U39_13280) - 2685981..2686658 (+) 678 WP_053574092.1 PspA/IM30 family protein -
  E3U39_RS13285 (E3U39_13285) - 2686764..2687633 (+) 870 WP_015418186.1 DUF4097 family beta strand repeat-containing protein -
  E3U39_RS13290 (E3U39_13290) liaF 2687660..2688391 (+) 732 WP_003151794.1 cell wall-active antibiotics response protein LiaF -
  E3U39_RS13295 (E3U39_13295) liaS 2688388..2689470 (+) 1083 WP_015418185.1 two-component system sensor histidine kinase LiaS -
  E3U39_RS13300 (E3U39_13300) vraR 2689448..2690080 (+) 633 WP_007410060.1 response regulator transcription factor Regulator
  E3U39_RS13305 (E3U39_13305) - 2690123..2691235 (-) 1113 WP_040238897.1 Ger(x)C family spore germination protein -
  E3U39_RS13310 (E3U39_13310) - 2691232..2692332 (-) 1101 WP_040238898.1 spore germination protein -
  E3U39_RS13315 (E3U39_13315) - 2692307..2693749 (-) 1443 WP_015418182.1 spore germination protein -
  E3U39_RS13320 (E3U39_13320) - 2693866..2694051 (+) 186 WP_003151806.1 YvzF family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22963.64 Da        Isoelectric Point: 4.9953

>NTDB_id=309472 E3U39_RS13300 WP_007410060.1 2689448..2690080(+) (vraR) [Bacillus amyloliquefaciens strain FS1092]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAKLLPDVILMDLVMDGMDGIEATKQICATLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=309472 E3U39_RS13300 WP_007410060.1 2689448..2690080(+) (vraR) [Bacillus amyloliquefaciens strain FS1092]
GTGATTCGAGTGTTACTGATTGATGATCATGAAATGGTCAGGATGGGTCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAAAGCTTTTGCCGGATGTGATTTTAATGG
ACCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGACACTCAATGATCCGAAAATCATCGTG
CTGACGAGCTTCATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGCTGTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50

99.048

0.495
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39

Multiple sequence alignment