Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   E3U39_RS13080 Genome accession   NZ_CP038028
Coordinates   2645248..2647563 (+) Length   771 a.a.
NCBI ID   WP_053574082.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2640248..2652563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS13060 (E3U39_13060) - 2642329..2643000 (+) 672 WP_053574080.1 DsbA family protein -
  E3U39_RS13065 (E3U39_13065) - 2642990..2643409 (+) 420 WP_012118443.1 disulfide oxidoreductase -
  E3U39_RS13070 (E3U39_13070) - 2643443..2644243 (-) 801 WP_053574081.1 zinc-dependent metalloprotease -
  E3U39_RS13075 (E3U39_13075) - 2644466..2645074 (+) 609 WP_007410017.1 trimeric intracellular cation channel family protein -
  E3U39_RS13080 (E3U39_13080) helD 2645248..2647563 (+) 2316 WP_053574082.1 RNA polymerase recycling motor HelD Machinery gene
  E3U39_RS13085 (E3U39_13085) - 2647738..2649546 (+) 1809 WP_053574083.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  E3U39_RS13090 (E3U39_13090) cysI 2649574..2651289 (+) 1716 WP_053574084.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88060.07 Da        Isoelectric Point: 6.2819

>NTDB_id=309469 E3U39_RS13080 WP_053574082.1 2645248..2647563(+) (helD) [Bacillus amyloliquefaciens strain FS1092]
MAKRDKEWKEEQERINFVMKELEQKQTHLEASSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLAAIAYKASSAFQSMIDRYAGSLSGSGLMCKQISFRGDILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAVVYQTLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGADEKPDHWESIGALTRNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVL
RTDTEKARQEQLADTIRELRQKGWETVAVICKTAAEAKKVFQTVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAAQYKSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=309469 E3U39_RS13080 WP_053574082.1 2645248..2647563(+) (helD) [Bacillus amyloliquefaciens strain FS1092]
ATGGCAAAACGTGATAAAGAGTGGAAAGAAGAGCAGGAAAGAATCAATTTTGTCATGAAGGAACTGGAACAGAAACAAAC
TCATCTTGAAGCCTCATCGGGCGGATTGAAGCAGGATATTGTCGGGCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGACGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCCTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTATGAAGTTCCCGAAGAA
ACGATAGAAGGAGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGCCATTCCGGACAGCATATGAAAAACATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGGGATGAAAAAAGCAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGTCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTCAACAGTTATGTTTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCATCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAACCAGGACGCACTTTCTGTAAGGCTTGCAGCCATTGCTTACAAAGCGTCATCAGCTTTCCAGTCCATGATTGACCG
CTACGCCGGCTCGCTTTCCGGCTCGGGTCTGATGTGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCAAAAGAAC
GGATTGAAGACTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACAGCGGAATGGCTTCTC
GCGGAAATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGTGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGAACCTGCATTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATTATTGTAGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGATGAAAAGCCCGATCATTGGGAGAGCATCGGCGCTTTGAC
CAGAAACGCATTTGCAGAACGGTCACTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGTTAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTGACGTATATACAA
AGCATCTTCCCGGCGGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATTACGGGCCCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAACCTTTTAACCGGAACGGGGAAAAACCGCGTGTTTTG
CGGACGGATACAGAAAAAGCGCGGCAGGAACAATTGGCGGATACAATCCGGGAGCTCAGACAAAAAGGCTGGGAGACGGT
CGCCGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTGTTTCAGACAGTCAGCGCCGAGAGCGGTGTCCGCTTGATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGCCGCTGATGCCTCTGCTGCCCAGTACAAAAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGCGCGAT
GCATCATCTGACCGTGCTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C)

(601-684)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.883

99.87

0.668

Multiple sequence alignment