Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   E3U39_RS09610 Genome accession   NZ_CP038028
Coordinates   1934519..1935313 (+) Length   264 a.a.
NCBI ID   WP_015418612.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1929519..1940313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS09590 (E3U39_09590) walR 1929781..1930488 (+) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -
  E3U39_RS09595 (E3U39_09595) walK 1930495..1932330 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  E3U39_RS09600 (E3U39_09600) yycH 1932320..1933678 (+) 1359 WP_004393107.1 two-component system activity regulator YycH -
  E3U39_RS09605 (E3U39_09605) yycI 1933665..1934504 (+) 840 WP_053573861.1 two-component system regulatory protein YycI -
  E3U39_RS09610 (E3U39_09610) vicX 1934519..1935313 (+) 795 WP_015418612.1 MBL fold metallo-hydrolase Regulator
  E3U39_RS09615 (E3U39_09615) htrA 1935400..1936596 (+) 1197 WP_007614967.1 S1C family serine protease Regulator
  E3U39_RS09620 (E3U39_09620) - 1937086..1937295 (+) 210 WP_015418611.1 winged helix-turn-helix domain-containing protein -
  E3U39_RS09625 (E3U39_09625) - 1937292..1938710 (+) 1419 WP_039253191.1 HAMP domain-containing sensor histidine kinase -
  E3U39_RS09630 (E3U39_09630) - 1938942..1939949 (+) 1008 WP_031379194.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29102.18 Da        Isoelectric Point: 6.0271

>NTDB_id=309448 E3U39_RS09610 WP_015418612.1 1934519..1935313(+) (vicX) [Bacillus amyloliquefaciens strain FS1092]
MGLQFSVLASGSTGNAFYLETDEHSFLVDAGLSGKAMDGLMEKIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=309448 E3U39_RS09610 WP_015418612.1 1934519..1935313(+) (vicX) [Bacillus amyloliquefaciens strain FS1092]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGATGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAAAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGACTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTAAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCCCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCCAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527

Multiple sequence alignment