Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   E3U39_RS08905 Genome accession   NZ_CP038028
Coordinates   1806871..1807101 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801871..1812101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS08895 (E3U39_08895) spoVT 1802595..1803131 (-) 537 WP_004264646.1 stage V sporulation protein T -
  E3U39_RS08900 (E3U39_08900) mfd 1803268..1806801 (-) 3534 WP_053573821.1 transcription-repair coupling factor -
  E3U39_RS08905 (E3U39_08905) subA/fin 1806871..1807101 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  E3U39_RS08910 (E3U39_08910) pth 1807163..1807729 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  E3U39_RS08915 (E3U39_08915) - 1807814..1808422 (-) 609 WP_014416724.1 50S ribosomal protein L25/general stress protein Ctc -
  E3U39_RS08920 (E3U39_08920) - 1808507..1809460 (-) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  E3U39_RS08925 (E3U39_08925) glmU 1809482..1810852 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  E3U39_RS08930 (E3U39_08930) spoVG 1811044..1811337 (-) 294 WP_004264660.1 septation regulator SpoVG -
  E3U39_RS08935 (E3U39_08935) ridA 1811533..1811913 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=309440 E3U39_RS08905 WP_004264650.1 1806871..1807101(-) (subA/fin) [Bacillus amyloliquefaciens strain FS1092]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=309440 E3U39_RS08905 WP_004264650.1 1806871..1807101(-) (subA/fin) [Bacillus amyloliquefaciens strain FS1092]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868

Multiple sequence alignment