Detailed information NTG0309434

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: E3U39_RS07680
• Genome accession: NZ_CP038028
• Coordinates: 1556396..1557517 (-)
• Length: 373 a.a.
• NCBI ID: WP_033575143.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FS1092
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1551396..1562517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3U39_RS07660 (E3U39_07660)	-	1551844..1552539 (-)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-
E3U39_RS07665 (E3U39_07665)	-	1552594..1553553 (-)	960	WP_031378693.1	metal ABC transporter substrate-binding protein	-
E3U39_RS07670 (E3U39_07670)	-	1553738..1555417 (-)	1680	WP_039252865.1	alpha-glucosidase	-
E3U39_RS07675 (E3U39_07675)	-	1555501..1556280 (-)	780	WP_053573761.1	glucose 1-dehydrogenase	-
E3U39_RS07680 (E3U39_07680)	rapF	1556396..1557517 (-)	1122	WP_033575143.1	tetratricopeptide repeat protein	Regulator
E3U39_RS07685 (E3U39_07685)	-	1557627..1558130 (+)	504	WP_015416743.1	M15 family metallopeptidase	-
E3U39_RS07690 (E3U39_07690)	-	1558127..1559485 (-)	1359	WP_053573762.1	YcdB/YcdC domain-containing protein	-
E3U39_RS07695 (E3U39_07695)	-	1559686..1561086 (-)	1401	WP_015416741.1	YcdB/YcdC domain-containing protein	-
E3U39_RS07700 (E3U39_07700)	-	1561213..1562208 (+)	996	WP_015416740.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.49 Da
• Isoelectric Point: 5.0032

>NTDB_id=309434 E3U39_RS07680 WP_033575143.1 1556396..1557517(-) (rapF) [Bacillus amyloliquefaciens strain FS1092]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=309434 E3U39_RS07680 WP_033575143.1 1556396..1557517(-) (rapF) [Bacillus amyloliquefaciens strain FS1092]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGATTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402