Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   E3U39_RS04965 Genome accession   NZ_CP038028
Coordinates   1033267..1033983 (-) Length   238 a.a.
NCBI ID   WP_053573584.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028267..1038983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS04950 (E3U39_04950) - 1030536..1031675 (+) 1140 WP_053573585.1 YibE/F family protein -
  E3U39_RS04955 (E3U39_04955) - 1031672..1032433 (+) 762 WP_007408500.1 YibE/F family protein -
  E3U39_RS04960 (E3U39_04960) - 1032469..1033134 (-) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  E3U39_RS04965 (E3U39_04965) treR 1033267..1033983 (-) 717 WP_053573584.1 trehalose operon repressor Regulator
  E3U39_RS04970 (E3U39_04970) treC 1034005..1035690 (-) 1686 WP_053573583.1 alpha,alpha-phosphotrehalase -
  E3U39_RS04975 (E3U39_04975) treP 1035766..1037181 (-) 1416 WP_053573582.1 PTS system trehalose-specific EIIBC component -
  E3U39_RS04980 (E3U39_04980) - 1037452..1037712 (+) 261 WP_014417185.1 spore germination protein -
  E3U39_RS04985 (E3U39_04985) - 1037727..1037969 (+) 243 WP_003155595.1 spore germination protein -
  E3U39_RS04990 (E3U39_04990) - 1037985..1038416 (+) 432 WP_017419105.1 Hsp20/alpha crystallin family protein -
  E3U39_RS04995 (E3U39_04995) - 1038426..1038803 (-) 378 WP_007610033.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27461.46 Da        Isoelectric Point: 7.3204

>NTDB_id=309418 E3U39_RS04965 WP_053573584.1 1033267..1033983(-) (treR) [Bacillus amyloliquefaciens strain FS1092]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEQIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLDDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=309418 E3U39_RS04965 WP_053573584.1 1033267..1033983(-) (treR) [Bacillus amyloliquefaciens strain FS1092]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACAAATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTACTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGACGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424