Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DL545_RS15960 Genome accession   NZ_CP031653
Coordinates   3069809..3070438 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain UK_Dog_Liverpool     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064809..3075438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL545_RS15945 (DL545_15945) helD 3065051..3067105 (-) 2055 WP_000420536.1 DNA helicase IV -
  DL545_RS15950 (DL545_15950) yccF 3067228..3067674 (+) 447 WP_001261235.1 YccF domain-containing protein -
  DL545_RS15955 (DL545_15955) yccS 3067684..3069846 (+) 2163 WP_000875023.1 YccS family putative transporter -
  DL545_RS15960 (DL545_15960) sxy/tfoX 3069809..3070438 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DL545_RS15965 (DL545_15965) sulA 3070657..3071166 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DL545_RS15975 (DL545_15975) ompA 3071523..3072575 (+) 1053 WP_001361736.1 porin OmpA -
  DL545_RS15980 (DL545_15980) matP 3072651..3073103 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DL545_RS15985 (DL545_15985) ycbZ 3073289..3075049 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=309403 DL545_RS15960 WP_000839153.1 3069809..3070438(-) (sxy/tfoX) [Escherichia coli strain UK_Dog_Liverpool]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=309403 DL545_RS15960 WP_000839153.1 3069809..3070438(-) (sxy/tfoX) [Escherichia coli strain UK_Dog_Liverpool]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment