Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   E3U39_RS01285 Genome accession   NZ_CP038028
Coordinates   313024..313473 (-) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 308024..318473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS01250 (E3U39_01250) sepM 308121..309143 (-) 1023 WP_012117493.1 SepM family pheromone-processing serine protease Regulator
  E3U39_RS01255 (E3U39_01255) - 309149..309928 (-) 780 WP_014304961.1 patatin family protein -
  E3U39_RS01260 (E3U39_01260) ylbJ 310108..311334 (+) 1227 WP_053573413.1 sporulation integral membrane protein YlbJ -
  E3U39_RS01265 (E3U39_01265) coaD 311353..311835 (-) 483 WP_014417707.1 pantetheine-phosphate adenylyltransferase -
  E3U39_RS01270 (E3U39_01270) rsmD 311840..312394 (-) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  E3U39_RS01280 (E3U39_01280) - 312693..312965 (-) 273 WP_014417705.1 YlbG family protein -
  E3U39_RS01285 (E3U39_01285) ylbF 313024..313473 (-) 450 WP_003154472.1 YlbF family regulator Regulator
  E3U39_RS01290 (E3U39_01290) - 313544..313783 (-) 240 WP_003154475.1 YlbE-like family protein -
  E3U39_RS01295 (E3U39_01295) - 313799..314209 (-) 411 WP_053573412.1 YlbD family protein -
  E3U39_RS01300 (E3U39_01300) - 314374..315414 (-) 1041 WP_053573411.1 CAP domain-containing protein -
  E3U39_RS01305 (E3U39_01305) - 315499..315942 (-) 444 WP_014417702.1 CBS domain-containing protein -
  E3U39_RS01310 (E3U39_01310) - 316082..316441 (+) 360 WP_007409688.1 YugN family protein -
  E3U39_RS01315 (E3U39_01315) ctaG 316475..317359 (-) 885 WP_095060010.1 cytochrome c oxidase assembly factor CtaG -
  E3U39_RS01320 (E3U39_01320) ctaF 317384..317716 (-) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  E3U39_RS01325 (E3U39_01325) ctaE 317719..318342 (-) 624 WP_003154482.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=309386 E3U39_RS01285 WP_003154472.1 313024..313473(-) (ylbF) [Bacillus amyloliquefaciens strain FS1092]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=309386 E3U39_RS01285 WP_003154472.1 313024..313473(-) (ylbF) [Bacillus amyloliquefaciens strain FS1092]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879

Multiple sequence alignment