Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   E3U39_RS00805 Genome accession   NZ_CP038028
Coordinates   212143..213132 (-) Length   329 a.a.
NCBI ID   WP_003154301.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 207143..218132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS00770 (E3U39_00770) rimM 207852..208376 (-) 525 WP_003154290.1 ribosome maturation factor RimM -
  E3U39_RS00775 (E3U39_00775) - 208381..208767 (-) 387 WP_053573435.1 YlqD family protein -
  E3U39_RS00780 (E3U39_00780) - 208858..209103 (-) 246 WP_007611392.1 KH domain-containing protein -
  E3U39_RS00785 (E3U39_00785) rpsP 209103..209375 (-) 273 WP_003154296.1 30S ribosomal protein S16 -
  E3U39_RS00790 (E3U39_00790) ffh 209481..210821 (-) 1341 WP_014417759.1 signal recognition particle protein -
  E3U39_RS00795 (E3U39_00795) - 210835..211167 (-) 333 WP_003154299.1 putative DNA-binding protein -
  E3U39_RS00800 (E3U39_00800) - 211289..212059 (-) 771 WP_053573434.1 aminoglycoside phosphotransferase family protein -
  E3U39_RS00805 (E3U39_00805) pilA 212143..213132 (-) 990 WP_003154301.1 signal recognition particle-docking protein FtsY Machinery gene
  E3U39_RS00810 (E3U39_00810) smc 213152..216712 (-) 3561 WP_053573433.1 chromosome segregation protein SMC -
  E3U39_RS00815 (E3U39_00815) rncS 216814..217563 (-) 750 WP_007409760.1 ribonuclease III -
  E3U39_RS00820 (E3U39_00820) acpP 217702..217935 (-) 234 WP_003154310.1 acyl carrier protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36096.28 Da        Isoelectric Point: 5.0098

>NTDB_id=309380 E3U39_RS00805 WP_003154301.1 212143..213132(-) (pilA) [Bacillus amyloliquefaciens strain FS1092]
MSFFKKLKEKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFTTVMELIDELKKEV
KLKNIQDPQEVQSVISEKLVDIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFR
AGAIEQLEVWGERTGVPVIKQAAGSDPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPH
EVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQRFDAESYVYGLF
SDLVEKAED

Nucleotide


Download         Length: 990 bp        

>NTDB_id=309380 E3U39_RS00805 WP_003154301.1 212143..213132(-) (pilA) [Bacillus amyloliquefaciens strain FS1092]
ATGAGCTTTTTTAAAAAATTAAAAGAGAAAATCACGAAACAGACAGACTCCGTCTCTGAAAAATTTAAAGATGGTCTTGA
AAAAACAAGAAATTCCTTCTCAAATAAAGTGAACGAACTCGTCTCCCGCTACCGGAAAGTCGACGAGGATTTCTTCGAGG
AGCTTGAGGAAGTGCTGATTGGCGCTGACGTAGGTTTTACAACCGTTATGGAGCTGATTGATGAGCTCAAAAAAGAAGTG
AAGCTGAAAAACATCCAGGATCCTCAGGAAGTGCAGTCCGTCATTTCTGAAAAGCTTGTCGACATTTATAACAGCGGCGA
CGAACAGATTTCTGAATTAAATATTCAGGATGGGCGCCTGAACGTTATTCTGCTTGTCGGGGTAAACGGCGTCGGAAAAA
CGACAACGATCGGAAAACTTGCCCATAAGCTGAAGAATGAAGGCAAATCCGTTGTGCTCGCTGCCGGAGACACCTTCAGA
GCCGGGGCGATTGAACAGCTTGAAGTGTGGGGGGAGCGTACAGGCGTGCCTGTCATTAAACAGGCTGCCGGAAGCGACCC
TGCTGCGGTTATTTATGATGCCGTACACGCGGCTAAAGCAAGAGGAGCGGATGTGCTGATTTGTGATACGGCCGGCCGCC
TTCAGAATAAAGTAAACTTAATGAAAGAGCTTGAAAAAGTCAAACGCGTCATCGAACGCGAAGTGCCTGAGGCTCCGCAT
GAGGTTCTCCTTGCGCTGGACGCGACGACAGGCCAAAATGCGATGGCGCAGGCGAAAGAATTCTCCAAAGCGACGAATGT
GACGGGTATCGCGTTAACGAAGCTTGACGGCACCGCAAAAGGCGGTATCGTCCTGGCGATCCGCAATGAGCTTCACATCC
CCGTGAAACTGGTCGGCCTCGGAGAAAAGGTTGACGATCTCCAGCGGTTTGATGCAGAATCTTACGTATACGGTCTCTTT
TCTGATTTAGTTGAAAAAGCCGAGGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(121-320)

SRP54-type protein, helical bundle domain (SRP54_N)

(33-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

45.333

91.185

0.413