Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   E3U39_RS00610 Genome accession   NZ_CP038028
Coordinates   179011..179373 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174011..184373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS00585 (E3U39_00585) flhB 175536..176615 (-) 1080 WP_007409787.1 flagellar biosynthesis protein FlhB -
  E3U39_RS00590 (E3U39_00590) fliR 176615..177394 (-) 780 WP_017417780.1 flagellar biosynthetic protein FliR -
  E3U39_RS00595 (E3U39_00595) fliQ 177401..177670 (-) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  E3U39_RS00600 (E3U39_00600) fliP 177685..178350 (-) 666 WP_007409786.1 flagellar type III secretion system pore protein FliP -
  E3U39_RS00605 (E3U39_00605) fliZ 178343..178996 (-) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  E3U39_RS00610 (E3U39_00610) pilH 179011..179373 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  E3U39_RS00615 (E3U39_00615) fliY 179400..180536 (-) 1137 WP_015417472.1 flagellar motor switch phosphatase FliY -
  E3U39_RS00620 (E3U39_00620) fliM 180526..181524 (-) 999 WP_003154240.1 flagellar motor switch protein FliM -
  E3U39_RS00625 (E3U39_00625) fliL 181558..181977 (-) 420 WP_014417773.1 flagellar basal body-associated protein FliL -
  E3U39_RS00630 (E3U39_00630) - 181974..182189 (-) 216 WP_003154243.1 flagellar FlbD family protein -
  E3U39_RS00635 (E3U39_00635) flgG 182229..183005 (-) 777 WP_007409783.1 flagellar basal body rod protein FlgG -
  E3U39_RS00640 (E3U39_00640) flgD 183030..183470 (-) 441 WP_015239855.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=309377 E3U39_RS00610 WP_003154238.1 179011..179373(-) (pilH) [Bacillus amyloliquefaciens strain FS1092]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=309377 E3U39_RS00610 WP_003154238.1 179011..179373(-) (pilH) [Bacillus amyloliquefaciens strain FS1092]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAAGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCAGTCGAAAAATTCAAAGAGCATTCCCCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACAGCTTTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGCCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTTGAAGCTATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383