Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   E3I93_RS08080 Genome accession   NZ_CP038021
Coordinates   1624673..1626352 (-) Length   559 a.a.
NCBI ID   WP_000942216.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 04-002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1619673..1631352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3I93_RS08060 (E3I93_08060) - 1619823..1621097 (-) 1275 WP_000406855.1 dihydrolipoamide acetyltransferase family protein -
  E3I93_RS08065 (E3I93_08065) - 1621110..1622093 (-) 984 WP_001096631.1 alpha-ketoacid dehydrogenase subunit beta -
  E3I93_RS08070 (E3I93_08070) - 1622093..1623085 (-) 993 WP_000568358.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  E3I93_RS08075 (E3I93_08075) lpdA 1623101..1624522 (-) 1422 WP_001291540.1 dihydrolipoyl dehydrogenase -
  E3I93_RS08080 (E3I93_08080) recN 1624673..1626352 (-) 1680 WP_000942216.1 DNA repair protein RecN Machinery gene
  E3I93_RS08085 (E3I93_08085) argR 1626368..1626820 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  E3I93_RS08090 (E3I93_08090) - 1627251..1628132 (-) 882 WP_000183386.1 polyprenyl synthetase family protein -
  E3I93_RS08095 (E3I93_08095) - 1628110..1628340 (-) 231 WP_000159866.1 exodeoxyribonuclease VII small subunit -
  E3I93_RS08100 (E3I93_08100) xseA 1628333..1629670 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  E3I93_RS08105 (E3I93_08105) nusB 1629687..1630076 (-) 390 WP_000087384.1 transcription antitermination factor NusB -
  E3I93_RS08110 (E3I93_08110) - 1630136..1630498 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64174.73 Da        Isoelectric Point: 4.7574

>NTDB_id=309331 E3I93_RS08080 WP_000942216.1 1624673..1626352(-) (recN) [Staphylococcus aureus strain 04-002]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQGLEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRHR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=309331 E3I93_RS08080 WP_000942216.1 1624673..1626352(-) (recN) [Staphylococcus aureus strain 04-002]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGGGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCTCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAATGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
CTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACATAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44

Multiple sequence alignment