Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DY471_RS00020 Genome accession   NZ_CP031643
Coordinates   3172..4299 (+) Length   375 a.a.
NCBI ID   WP_071730788.1    Uniprot ID   -
Organism   Bacillus anthracis strain MCCC 1A01412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DY471_RS00005 (DY471_00005) dnaA 161..1501 (+) 1341 WP_071730784.1 chromosomal replication initiator protein DnaA -
  DY471_RS00010 (DY471_00010) dnaN 1680..2819 (+) 1140 WP_071730786.1 DNA polymerase III subunit beta -
  DY471_RS00015 (DY471_00015) yaaA 2947..3159 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  DY471_RS00020 (DY471_00020) recF 3172..4299 (+) 1128 WP_071730788.1 DNA replication/repair protein RecF Machinery gene
  DY471_RS00025 (DY471_00025) gyrB 4338..6260 (+) 1923 WP_000435991.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DY471_RS00030 (DY471_00030) gyrA 6349..8820 (+) 2472 WP_001282851.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43281.61 Da        Isoelectric Point: 6.5974

>NTDB_id=309316 DY471_RS00020 WP_071730788.1 3172..4299(+) (recF) [Bacillus anthracis strain MCCC 1A01412]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELICWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=309316 DY471_RS00020 WP_071730788.1 3172..4299(+) (recF) [Bacillus anthracis strain MCCC 1A01412]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCAAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCTGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCAAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTGGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.033

98.133

0.648

Multiple sequence alignment