Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   DY470_RS21365 Genome accession   NZ_CP031642
Coordinates   4032494..4033537 (-) Length   347 a.a.
NCBI ID   WP_001013200.1    Uniprot ID   A0AA96SWA8
Organism   Bacillus anthracis strain MCCC 1A02161     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4027494..4038537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DY470_RS21320 (DY470_21320) - 4027921..4028121 (-) 201 WP_000106081.1 YqzE family protein -
  DY470_RS21325 (DY470_21325) aroK 4028160..4028657 (-) 498 WP_000836631.1 shikimate kinase AroK -
  DY470_RS21330 (DY470_21330) - 4028778..4029428 (-) 651 WP_071736839.1 2OG-Fe(II) oxygenase -
  DY470_RS21335 (DY470_21335) comGG 4029604..4029975 (-) 372 WP_001231191.1 competence type IV pilus minor pilin ComGG -
  DY470_RS21340 (DY470_21340) comGF 4029972..4030442 (-) 471 WP_071736838.1 competence type IV pilus minor pilin ComGF -
  DY470_RS21345 (DY470_21345) comGE 4030394..4030714 (-) 321 WP_071736837.1 competence type IV pilus minor pilin ComGE -
  DY470_RS21350 (DY470_21350) comGD 4030707..4031162 (-) 456 WP_000810395.1 comG operon protein ComGD -
  DY470_RS21355 (DY470_21355) comGC 4031159..4031458 (-) 300 WP_001178696.1 comG operon protein ComGC -
  DY470_RS21360 (DY470_21360) comGB 4031470..4032501 (-) 1032 WP_071736836.1 comG operon protein ComGB -
  DY470_RS21365 (DY470_21365) comGA 4032494..4033537 (-) 1044 WP_001013200.1 competence protein ComGA Machinery gene
  DY470_RS21370 (DY470_21370) - 4033743..4034438 (+) 696 WP_000434132.1 helix-turn-helix domain-containing protein -
  DY470_RS21375 (DY470_21375) - 4034564..4034806 (+) 243 WP_000440711.1 DUF2626 domain-containing protein -
  DY470_RS21380 (DY470_21380) - 4034914..4036308 (+) 1395 WP_001094339.1 L-cystine transporter -
  DY470_RS21385 (DY470_21385) - 4036525..4036740 (-) 216 WP_001008320.1 DUF3912 family protein -
  DY470_RS21390 (DY470_21390) - 4036993..4037304 (+) 312 WP_001093243.1 hypothetical protein -
  DY470_RS21395 (DY470_21395) - 4037341..4037829 (-) 489 WP_000764247.1 hypothetical protein -
  DY470_RS21400 (DY470_21400) - 4037909..4038283 (-) 375 WP_001012352.1 nucleoside 2-deoxyribosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39412.97 Da        Isoelectric Point: 9.2147

>NTDB_id=309299 DY470_RS21365 WP_001013200.1 4032494..4033537(-) (comGA) [Bacillus anthracis strain MCCC 1A02161]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=309299 DY470_RS21365 WP_001013200.1 4032494..4033537(-) (comGA) [Bacillus anthracis strain MCCC 1A02161]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGGAAAGATTTAATGACGAAATATTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGTCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366

Multiple sequence alignment