Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DY470_RS08145 Genome accession   NZ_CP031642
Coordinates   1520038..1520640 (-) Length   200 a.a.
NCBI ID   WP_071737470.1    Uniprot ID   -
Organism   Bacillus anthracis strain MCCC 1A02161     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1515038..1525640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DY470_RS08125 (DY470_08125) dnaD 1515363..1516070 (+) 708 WP_000728549.1 DNA replication protein DnaD -
  DY470_RS08130 (DY470_08130) nth 1516086..1516733 (+) 648 WP_000933025.1 endonuclease III -
  DY470_RS08135 (DY470_08135) - 1516737..1517255 (+) 519 WP_000442686.1 YpoC family protein -
  DY470_RS08140 (DY470_08140) - 1517279..1519972 (-) 2694 WP_071737469.1 PBP1A family penicillin-binding protein -
  DY470_RS08145 (DY470_08145) recU 1520038..1520640 (-) 603 WP_071737470.1 Holliday junction resolvase RecU Machinery gene
  DY470_RS08150 (DY470_08150) - 1520744..1521769 (+) 1026 WP_071737523.1 DUF2515 domain-containing protein -
  DY470_RS27995 - 1522036..1522212 (-) 177 WP_001982922.1 hypothetical protein -
  DY470_RS08155 (DY470_08155) - 1522298..1522540 (+) 243 WP_001252043.1 hypothetical protein -
  DY470_RS08160 (DY470_08160) - 1522556..1522900 (+) 345 WP_000872959.1 YppE family protein -
  DY470_RS08165 (DY470_08165) - 1522926..1523117 (-) 192 WP_000242663.1 YppF family protein -
  DY470_RS08170 (DY470_08170) - 1523295..1523774 (+) 480 WP_000487704.1 YppG family protein -
  DY470_RS08175 (DY470_08175) - 1523930..1524364 (+) 435 WP_071737471.1 CotD family spore coat protein -
  DY470_RS08180 (DY470_08180) - 1524421..1524975 (+) 555 WP_071737472.1 DUF1273 domain-containing protein -
  DY470_RS08185 (DY470_08185) gpsB 1525073..1525411 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23328.63 Da        Isoelectric Point: 9.5601

>NTDB_id=309287 DY470_RS08145 WP_071737470.1 1520038..1520640(-) (recU) [Bacillus anthracis strain MCCC 1A02161]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDSKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=309287 DY470_RS08145 WP_071737470.1 1520038..1520640(-) (recU) [Bacillus anthracis strain MCCC 1A02161]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATTCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAACATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62

100

0.62

Multiple sequence alignment