Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DZC75_RS18600 Genome accession   NZ_CP031641
Coordinates   4231386..4232753 (-) Length   455 a.a.
NCBI ID   WP_029614776.1    Uniprot ID   A0AAI8KDW5
Organism   Pseudomonas parafulva strain JBCS1880     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4226386..4237753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZC75_RS18585 (DZC75_18585) - 4226786..4229449 (-) 2664 WP_205419335.1 TonB-dependent receptor -
  DZC75_RS18590 (DZC75_18590) - 4229764..4230741 (-) 978 WP_116889230.1 FecR domain-containing protein -
  DZC75_RS18595 (DZC75_18595) - 4230810..4231313 (-) 504 WP_029614777.1 RNA polymerase sigma factor -
  DZC75_RS18600 (DZC75_18600) radA 4231386..4232753 (-) 1368 WP_029614776.1 DNA repair protein RadA Machinery gene
  DZC75_RS18605 (DZC75_18605) mscL 4232929..4233348 (+) 420 WP_029614775.1 large-conductance mechanosensitive channel protein MscL -
  DZC75_RS18610 (DZC75_18610) - 4233423..4234199 (-) 777 WP_039580342.1 ferredoxin--NADP reductase -
  DZC75_RS18615 (DZC75_18615) - 4234397..4235110 (+) 714 WP_116889232.1 autoinducer binding domain-containing protein -
  DZC75_RS18620 (DZC75_18620) - 4235200..4236324 (+) 1125 WP_116889234.1 methyltransferase -
  DZC75_RS18630 (DZC75_18630) - 4236690..4236830 (-) 141 WP_037028932.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48763.19 Da        Isoelectric Point: 6.9556

>NTDB_id=309260 DZC75_RS18600 WP_029614776.1 4231386..4232753(-) (radA) [Pseudomonas parafulva strain JBCS1880]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGAAAAPAGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATHMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=309260 DZC75_RS18600 WP_029614776.1 4231386..4232753(-) (radA) [Pseudomonas parafulva strain JBCS1880]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAGTG
CGGCGCCTGGAATACCCTGGTCGAAACCATGATCGAGAGCGGCGCTGCAGCGGCCCCGGCCGGGCGCGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATCCCGCGTTTCACCACCAGCAGCACGGAACTG
GACCGCGTGCTCGGCGGCGGCCTGGTCGACGGCTCGGTGGTGCTGATCGGCGGTGATCCGGGCATCGGCAAGTCCACCAT
CCTGTTGCAAACCCTGTGCAACATCGCCACCCACATGCCAGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAACAGGTGG
CCATGCGCTCGCGGCGCCTGGGGTTGCCCCAGGACCAGCTCAAGGTGATGACCGAGACCTGCATCGAAACCATCATCGCC
ACCGCTCGCCAGGAAAAGCCGCGGGTGATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCGCC
CGGCGGCGTGGCCCAGGTGCGCGAGAGCACGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGCTCGCTGGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAATCGGACGGCCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGTGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAAGTCTCCAACCCCTCGGCGATCTTCCTCAACCGGACCCAGGAGGAAGTGCCCGGCA
GCGTGGTGATGGCGACTTGGGAGGGCACCCGACCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACGACAGCCACTTGGCC
AACCCGCGCCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCGGTGCTGCACCGCCACGGTGGCAT
TCCCACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGTGGGGTCAAGGTGCTGGAGACCGCCTCGGACCTGGCGCTGC
TGGCAGCGGTGATGTCCAGCCTGCGCAACCGCCCGTTGGCCCACGGTCTGCTGGTGTTCGGTGAAATCGGTCTGTCCGGC
GAGGTGCGCCCGGTGCCCAGCGGCCAGGAGCGTCTCAAGGAAGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCGCCCAAGGAAGCGCCGGCTGGACTGCAGGTGATCGCGGTGACGCGACTTGAGCAGGCGCTGGACGCGTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.49
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus mitis NCTC 12261

45.969

100

0.464
  radA Streptococcus mitis SK321

46.154

100

0.462

Multiple sequence alignment