Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   E3C75_RS08565 Genome accession   NZ_CP038020
Coordinates   1618006..1619676 (-) Length   556 a.a.
NCBI ID   WP_100262520.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613006..1624676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS08530 - 1613047..1613739 (-) 693 WP_011226119.1 phosphoglycerate mutase -
  E3C75_RS08535 - 1613994..1614932 (+) 939 WP_002950994.1 dihydroorotate oxidase -
  E3C75_RS08540 - 1614997..1615197 (-) 201 WP_011681249.1 hypothetical protein -
  E3C75_RS08545 - 1615256..1615531 (-) 276 WP_002950996.1 HU family DNA-binding protein -
  E3C75_RS08550 - 1615668..1616237 (-) 570 WP_111679626.1 YpmS family protein -
  E3C75_RS08555 - 1616230..1617106 (-) 877 Protein_1640 SGNH/GDSL hydrolase family protein -
  E3C75_RS08560 - 1617099..1617935 (-) 837 WP_100262519.1 DegV family protein -
  E3C75_RS08565 recN 1618006..1619676 (-) 1671 WP_100262520.1 DNA repair protein RecN Machinery gene
  E3C75_RS08570 - 1619685..1620131 (-) 447 WP_011681252.1 ArgR family transcriptional regulator -
  E3C75_RS08575 - 1620079..1620945 (-) 867 WP_082308995.1 TlyA family RNA methyltransferase -
  E3C75_RS08580 - 1620938..1621810 (-) 873 WP_022096738.1 polyprenyl synthetase family protein -
  E3C75_RS08585 - 1621810..1622025 (-) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  E3C75_RS08590 xseA 1622003..1623343 (-) 1341 WP_082308996.1 exodeoxyribonuclease VII large subunit -
  E3C75_RS11765 - 1623532..1624065 (-) 534 WP_223899692.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62472.64 Da        Isoelectric Point: 4.5445

>NTDB_id=309256 E3C75_RS08565 WP_100262520.1 1618006..1619676(-) (recN) [Streptococcus thermophilus strain ATCC 19258]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHISMLDAFGDKDFFQAKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNEN
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=309256 E3C75_RS08565 WP_100262520.1 1618006..1619676(-) (recN) [Streptococcus thermophilus strain ATCC 19258]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACCGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGGGCATCTAGCGAAG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGTTAATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGAAACTTTTTGGTAGATATCCATGGACAGCATGACCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAGCATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGCAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAAAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTCCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCAAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGGCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACCCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATACAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATCTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTGTCTCGACTTATGCTAGCCATTAAGTCAGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGCGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTCATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.45

Multiple sequence alignment