Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DZC75_RS06400 Genome accession   NZ_CP031641
Coordinates   1475136..1475771 (+) Length   211 a.a.
NCBI ID   WP_029612977.1    Uniprot ID   A0AAI8K9Q9
Organism   Pseudomonas parafulva strain JBCS1880     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470136..1480771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZC75_RS06380 (DZC75_06380) - 1470438..1471370 (+) 933 WP_029612975.1 ABC transporter ATP-binding protein -
  DZC75_RS06385 (DZC75_06385) - 1471367..1472146 (+) 780 WP_029612976.1 ABC transporter permease -
  DZC75_RS06390 (DZC75_06390) - 1472030..1472656 (-) 627 WP_116887815.1 DUF2062 domain-containing protein -
  DZC75_RS06395 (DZC75_06395) comA 1472800..1475022 (+) 2223 WP_116887816.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DZC75_RS06400 (DZC75_06400) exbB 1475136..1475771 (+) 636 WP_029612977.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DZC75_RS06405 (DZC75_06405) - 1475768..1476202 (+) 435 WP_116887817.1 biopolymer transporter ExbD -
  DZC75_RS06410 (DZC75_06410) lpxK 1476202..1477197 (+) 996 WP_029612979.1 tetraacyldisaccharide 4'-kinase -
  DZC75_RS06415 (DZC75_06415) - 1477239..1477424 (+) 186 WP_029612980.1 Trm112 family protein -
  DZC75_RS06420 (DZC75_06420) kdsB 1477421..1478185 (+) 765 WP_116887818.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DZC75_RS06425 (DZC75_06425) - 1478185..1478649 (+) 465 WP_029612983.1 low molecular weight protein-tyrosine-phosphatase -
  DZC75_RS06430 (DZC75_06430) murB 1478646..1479665 (+) 1020 WP_039576286.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22777.97 Da        Isoelectric Point: 6.4913

>NTDB_id=309250 DZC75_RS06400 WP_029612977.1 1475136..1475771(+) (exbB) [Pseudomonas parafulva strain JBCS1880]
MWELVKSGGWMMLPIILSSVAAMAIVVERLWTLRASRVAPSHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGDA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=309250 DZC75_RS06400 WP_029612977.1 1475136..1475771(+) (exbB) [Pseudomonas parafulva strain JBCS1880]
GTGTGGGAACTGGTCAAGTCTGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCGTCGCTGCCATGGCGATCGTGGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCGCGCCCTCCCATTTGCTGGGGCAGGTATGGATGTGGATCAAGGACA
AGCAGTTGACCAGCGACAAGCTCAAGGCGCTGCGTGCCGATTCTCCACTGGGCGAGATTCTTGCGGCAGGTCTGGCCAAC
TCCCGCCATGGCCGAGAGATCATGAAGGAATGCATCGAAGAGGCCGCTTCCCGAGTCATCCATGAGCTCGAGCGCTATAT
CAGCACGCTCGGCACCATCGCCGCCATGGCGCCTCTGCTCGGTCTGCTTGGCACAGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAATGCCGCCGTGCTCGCTGGGGGTATTTCCAAAGCCTTGGTGACCACCGCA
GCCGGTCTGATGGTGGGCATCCCCGCGGTGTTCTTCCATCGTTTCCTGTTGCGCCGCATCGATGAGCTGGTCGTTGGGAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGCTGCAAGGCGACCGCGAGGTCGAGGTGGCCGGAGGCGATGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment