Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   E3C75_RS05165 Genome accession   NZ_CP038020
Coordinates   977511..978227 (-) Length   238 a.a.
NCBI ID   WP_111679380.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 972511..983227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS05140 - 973186..973392 (+) 207 Protein_972 hypothetical protein -
  E3C75_RS05145 - 973461..973820 (+) 360 WP_111679374.1 SAG1252 family conjugative relaxosome accessory protein -
  E3C75_RS05150 - 973830..974195 (+) 366 WP_111679376.1 plasmid mobilization relaxosome protein MobC -
  E3C75_RS05155 - 974182..976047 (+) 1866 Protein_975 SAG1250 family conjugative relaxase -
  E3C75_RS05160 - 976139..977518 (-) 1380 WP_111679378.1 HAMP domain-containing sensor histidine kinase -
  E3C75_RS05165 scnR 977511..978227 (-) 717 WP_111679380.1 response regulator transcription factor Regulator
  E3C75_RS05170 - 978430..978600 (+) 171 WP_050572218.1 lacticin 481 family lantibiotic -
  E3C75_RS05175 - 978656..980680 (+) 2025 WP_111679382.1 cysteine peptidase family C39 domain-containing protein -
  E3C75_RS05180 - 980734..981642 (+) 909 WP_111679384.1 ABC transporter ATP-binding protein -
  E3C75_RS05185 - 981644..982399 (+) 756 WP_111679386.1 ABC transporter permease -
  E3C75_RS05190 - 982396..983130 (+) 735 WP_111679388.1 ABC transporter permease -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27144.59 Da        Isoelectric Point: 5.4369

>NTDB_id=309232 E3C75_RS05165 WP_111679380.1 977511..978227(-) (scnR) [Streptococcus thermophilus strain ATCC 19258]
MDIETPFLTRKILVVDDDIALNNSIREILSVSGFKKIYSAYSISEGIESFINNSIDLIILDVMLPDGKGYLLSKYVRKNS
DIPILFLTAKNEPEDEIQGLQSGGDDFVTKPFLPKILIYRIISLLRRSYKEDSNIIKLDNCIINLGNAIVEKNNEKLSLT
PIEIQIVRKLYDNKNYIVSTEAICDTVWGIDSFGYEKSLMVHIRNIREKIELNPSKPQYLITVKGLGYKLMVQELVHV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=309232 E3C75_RS05165 WP_111679380.1 977511..978227(-) (scnR) [Streptococcus thermophilus strain ATCC 19258]
ATGGATATAGAAACGCCTTTTTTAACTAGAAAAATATTGGTTGTTGATGATGATATTGCGTTAAACAATTCAATAAGGGA
GATACTATCAGTTTCTGGTTTCAAAAAAATATATAGTGCATACAGCATCAGTGAAGGAATAGAGTCTTTTATTAATAATT
CTATTGATTTGATTATATTAGATGTCATGCTTCCAGATGGGAAAGGATATTTACTATCAAAATACGTAAGAAAAAATTCT
GATATTCCAATTCTTTTTCTAACAGCAAAAAATGAACCTGAAGATGAAATTCAAGGGTTACAATCTGGAGGAGATGATTT
CGTGACTAAGCCTTTCCTTCCTAAAATTCTCATTTATCGCATAATTTCGCTTCTCCGTCGGTCGTACAAAGAAGACAGTA
ACATTATTAAATTAGATAATTGCATTATTAATTTAGGAAATGCTATTGTTGAAAAAAATAATGAAAAACTTTCTTTAACC
CCAATAGAAATTCAAATCGTTCGGAAATTATATGATAATAAAAACTATATTGTATCTACAGAGGCGATTTGTGATACCGT
ATGGGGCATTGATAGTTTTGGATATGAAAAGTCTTTAATGGTCCATATCAGAAATATCAGAGAAAAAATCGAACTTAACC
CTTCAAAGCCACAATACTTAATTACTGTTAAAGGACTCGGCTATAAACTAATGGTACAGGAGCTTGTACATGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

43.946

93.697

0.412

Multiple sequence alignment