Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPSH_RS06655 Genome accession   NC_010698
Coordinates   1366496..1367809 (-) Length   437 a.a.
NCBI ID   WP_000653610.1    Uniprot ID   -
Organism   Helicobacter pylori Shi470     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1361496..1372809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH_RS06625 (HPSH_07015) nadC 1361959..1362780 (-) 822 WP_000404038.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPSH_RS06630 (HPSH_07020) nadA 1362780..1363790 (-) 1011 WP_001141875.1 quinolinate synthase NadA -
  HPSH_RS06635 (HPSH_07025) - 1363780..1364583 (-) 804 WP_000561118.1 phosphatidylserine decarboxylase -
  HPSH_RS06640 (HPSH_07030) - 1364580..1365083 (-) 504 WP_000953077.1 DUF6115 domain-containing protein -
  HPSH_RS06645 (HPSH_07035) - 1365096..1365590 (-) 495 WP_012443434.1 hypothetical protein -
  HPSH_RS06650 (HPSH_07040) mqnP 1365583..1366467 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPSH_RS06655 (HPSH_07045) comEC/comE3 1366496..1367809 (-) 1314 WP_000653610.1 ComEC/Rec2 family competence protein Machinery gene
  HPSH_RS06660 (HPSH_07050) - 1367806..1369272 (-) 1467 WP_000349789.1 replicative DNA helicase -
  HPSH_RS06665 (HPSH_07055) - 1369283..1370677 (-) 1395 WP_000954067.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPSH_RS06670 (HPSH_07060) crdS 1370680..1371882 (-) 1203 WP_079990317.1 copper-sensing histidine kinase CrdS -
  HPSH_RS06675 (HPSH_07065) crdR 1371848..1372489 (-) 642 WP_001169813.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50179.17 Da        Isoelectric Point: 9.8368

>NTDB_id=30921 HPSH_RS06655 WP_000653610.1 1366496..1367809(-) (comEC/comE3) [Helicobacter pylori Shi470]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKAKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILSMPLTIPTISISSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=30921 HPSH_RS06655 WP_000653610.1 1366496..1367809(-) (comEC/comE3) [Helicobacter pylori Shi470]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAGCTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGTATGATC
TTTTATACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCCCA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTGTGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment