Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   E3C75_RS02140 Genome accession   NZ_CP038020
Coordinates   393296..394069 (+) Length   257 a.a.
NCBI ID   WP_084828404.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 388296..399069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS02120 - 388424..389848 (+) 1425 WP_046206377.1 CHAP domain-containing protein -
  E3C75_RS02125 - 390062..391027 (+) 966 WP_011680585.1 ribose-phosphate diphosphokinase -
  E3C75_RS02130 - 391076..391922 (-) 847 Protein_397 transposase -
  E3C75_RS02135 - 392134..393309 (+) 1176 WP_111679058.1 pyridoxal phosphate-dependent aminotransferase -
  E3C75_RS02140 recO 393296..394069 (+) 774 WP_084828404.1 DNA repair protein RecO Machinery gene
  E3C75_RS02145 plsX 394285..395289 (+) 1005 WP_100273488.1 phosphate acyltransferase PlsX -
  E3C75_RS02150 - 395289..395534 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  E3C75_RS02155 purC 395819..396526 (+) 708 WP_100262640.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29754.98 Da        Isoelectric Point: 5.0766

>NTDB_id=309197 E3C75_RS02140 WP_084828404.1 393296..394069(+) (recO) [Streptococcus thermophilus strain ATCC 19258]
MQKLESRGVILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=309197 E3C75_RS02140 WP_084828404.1 393296..394069(+) (recO) [Streptococcus thermophilus strain ATCC 19258]
ATGCAGAAGCTTGAGAGTAGGGGGGTTATCCTCTTCAATCGTAATTATCGCGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAGTGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607