Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EKI52_RS21100 Genome accession   NZ_CP037945
Coordinates   4106728..4107243 (+) Length   171 a.a.
NCBI ID   WP_001130220.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN027346     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4101728..4112243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI52_RS21055 (EKI52_21055) csrA 4102448..4102633 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EKI52_RS21085 (EKI52_21085) yqaB 4103958..4104524 (+) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EKI52_RS21090 (EKI52_21090) yqaA 4104521..4104949 (+) 429 WP_001287457.1 YqaA family protein -
  EKI52_RS21095 (EKI52_21095) gshA 4105022..4106578 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EKI52_RS21100 (EKI52_21100) luxS 4106728..4107243 (+) 516 WP_001130220.1 S-ribosylhomocysteine lyase Regulator
  EKI52_RS21105 (EKI52_21105) emrB 4107307..4108845 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EKI52_RS21110 (EKI52_21110) emrA 4108862..4110034 (-) 1173 WP_001448625.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EKI52_RS21115 (EKI52_21115) emrR 4110161..4110691 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EKI52_RS21120 (EKI52_21120) ygaH 4110782..4111117 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EKI52_RS21125 (EKI52_21125) ygaZ 4111107..4111844 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19460.29 Da        Isoelectric Point: 5.2597

>NTDB_id=309150 EKI52_RS21100 WP_001130220.1 4106728..4107243(+) (luxS) [Escherichia coli strain CFSAN027346]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDTITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=309150 EKI52_RS21100 WP_001130220.1 4106728..4107243(+) (luxS) [Escherichia coli strain CFSAN027346]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACACAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment