Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EKI52_RS11980 Genome accession   NZ_CP037945
Coordinates   2246643..2247119 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN027346     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2241643..2252119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI52_RS30690 (EKI52_11925) - 2242250..2242393 (+) 144 Protein_2305 restriction endonuclease -
  EKI52_RS31070 (EKI52_11940) - 2243065..2243193 (-) 129 Protein_2306 transcriptional regulator -
  EKI52_RS30115 - 2243169..2243318 (-) 150 Protein_2307 restriction endonuclease subunit M -
  EKI52_RS11945 (EKI52_11945) - 2243403..2243600 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  EKI52_RS11950 (EKI52_11950) - 2243612..2244046 (-) 435 WP_096955184.1 DUF5983 family protein -
  EKI52_RS11955 (EKI52_11955) - 2244138..2245294 (+) 1157 WP_085948186.1 IS3-like element IS600 family transposase -
  EKI52_RS11965 (EKI52_11965) - 2245364..2245738 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  EKI52_RS11970 (EKI52_11970) - 2245828..2246196 (-) 369 WP_001315620.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EKI52_RS11975 (EKI52_11975) - 2246359..2246580 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  EKI52_RS11980 (EKI52_11980) radC 2246643..2247119 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  EKI52_RS11985 (EKI52_11985) - 2247135..2247620 (-) 486 WP_000849588.1 antirestriction protein -
  EKI52_RS11990 (EKI52_11990) - 2247675..2248493 (-) 819 WP_001234622.1 DUF932 domain-containing protein -
  EKI52_RS12000 (EKI52_12000) - 2248593..2248826 (-) 234 WP_001119729.1 DUF905 family protein -
  EKI52_RS12005 (EKI52_12005) - 2248905..2249360 (-) 456 WP_133342163.1 IrmA family protein -
  EKI52_RS12010 (EKI52_12010) - 2249436..2251794 (-) 2359 Protein_2319 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=309111 EKI52_RS11980 WP_001186774.1 2246643..2247119(-) (radC) [Escherichia coli strain CFSAN027346]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=309111 EKI52_RS11980 WP_001186774.1 2246643..2247119(-) (radC) [Escherichia coli strain CFSAN027346]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399