Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | EKI52_RS04160 | Genome accession | NZ_CP037945 |
| Coordinates | 738118..738594 (-) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli strain CFSAN027346 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 733118..743594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKI52_RS04120 (EKI52_04120) | ghrA | 733843..734781 (-) | 939 | WP_000351317.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| EKI52_RS04130 (EKI52_04130) | - | 735252..736094 (-) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| EKI52_RS04135 (EKI52_04135) | - | 736179..736376 (-) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| EKI52_RS04140 (EKI52_04140) | - | 736388..736879 (-) | 492 | WP_000976857.1 | DUF5983 family protein | - |
| EKI52_RS04145 (EKI52_04145) | - | 736876..737250 (-) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| EKI52_RS04150 (EKI52_04150) | - | 737297..737671 (-) | 375 | WP_001280953.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| EKI52_RS04155 (EKI52_04155) | - | 737834..738055 (-) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| EKI52_RS04160 (EKI52_04160) | radC | 738118..738594 (-) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| EKI52_RS04165 (EKI52_04165) | - | 738610..739095 (-) | 486 | WP_000214398.1 | antirestriction protein | - |
| EKI52_RS04170 (EKI52_04170) | - | 739186..740004 (-) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| EKI52_RS04180 (EKI52_04180) | - | 740344..741414 (-) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| EKI52_RS04185 (EKI52_04185) | - | 741411..742316 (-) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=309093 EKI52_RS04160 WP_001186738.1 738118..738594(-) (radC) [Escherichia coli strain CFSAN027346]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=309093 EKI52_RS04160 WP_001186738.1 738118..738594(-) (radC) [Escherichia coli strain CFSAN027346]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |