Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | EKI57_RS28590 | Genome accession | NZ_CP037943 |
| Coordinates | 5530994..5531470 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli strain CFSAN027343 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 5525994..5536470
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKI57_RS28565 (EKI57_28565) | - | 5527272..5528177 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| EKI57_RS28570 (EKI57_28570) | - | 5528174..5529244 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| EKI57_RS28580 (EKI57_28580) | - | 5529584..5530402 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| EKI57_RS28585 (EKI57_28585) | - | 5530493..5530978 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| EKI57_RS28590 (EKI57_28590) | radC | 5530994..5531470 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| EKI57_RS28595 (EKI57_28595) | - | 5531533..5531754 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| EKI57_RS28600 (EKI57_28600) | - | 5531917..5532291 (+) | 375 | WP_001280953.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| EKI57_RS28605 (EKI57_28605) | - | 5532338..5532712 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| EKI57_RS28610 (EKI57_28610) | - | 5532709..5533200 (+) | 492 | WP_000976857.1 | DUF5983 family protein | - |
| EKI57_RS28615 (EKI57_28615) | - | 5533212..5533409 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| EKI57_RS28620 (EKI57_28620) | - | 5533494..5534336 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| EKI57_RS28630 (EKI57_28630) | ghrA | 5534807..5535745 (+) | 939 | WP_000351317.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=309087 EKI57_RS28590 WP_001186738.1 5530994..5531470(+) (radC) [Escherichia coli strain CFSAN027343]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=309087 EKI57_RS28590 WP_001186738.1 5530994..5531470(+) (radC) [Escherichia coli strain CFSAN027343]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |