Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EKI57_RS11250 Genome accession   NZ_CP037943
Coordinates   2097728..2098243 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN027343     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2092728..2103243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI57_RS11225 (EKI57_11225) ygaZ 2093127..2093864 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EKI57_RS11230 (EKI57_11230) ygaH 2093854..2094189 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EKI57_RS11235 (EKI57_11235) emrR 2094280..2094810 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EKI57_RS11240 (EKI57_11240) emrA 2094937..2096109 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EKI57_RS11245 (EKI57_11245) emrB 2096126..2097664 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EKI57_RS11250 (EKI57_11250) luxS 2097728..2098243 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  EKI57_RS11255 (EKI57_11255) gshA 2098393..2099949 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EKI57_RS11260 (EKI57_11260) yqaA 2100022..2100450 (-) 429 WP_001287457.1 YqaA family protein -
  EKI57_RS11265 (EKI57_11265) yqaB 2100447..2101013 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EKI57_RS11290 (EKI57_11290) csrA 2102198..2102383 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=309029 EKI57_RS11250 WP_001130207.1 2097728..2098243(-) (luxS) [Escherichia coli strain CFSAN027343]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=309029 EKI57_RS11250 WP_001130207.1 2097728..2098243(-) (luxS) [Escherichia coli strain CFSAN027343]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731