Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EKI57_RS06795 Genome accession   NZ_CP037943
Coordinates   1230684..1231160 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN027343     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1225684..1236160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI57_RS30700 - 1225981..1226094 (+) 114 Protein_1314 hypothetical protein -
  EKI57_RS06755 (EKI57_06755) - 1226133..1227671 (-) 1539 WP_000099148.1 IS66-like element ISEc22 family transposase -
  EKI57_RS06760 (EKI57_06760) tnpB 1227720..1228067 (-) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  EKI57_RS06765 (EKI57_06765) - 1228064..1228468 (-) 405 WP_000839179.1 transposase -
  EKI57_RS06770 (EKI57_06770) - 1228548..1228898 (+) 351 Protein_1318 IrmA family protein -
  EKI57_RS06775 (EKI57_06775) - 1228977..1229210 (+) 234 WP_001119729.1 DUF905 family protein -
  EKI57_RS06785 (EKI57_06785) - 1229310..1230128 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  EKI57_RS06790 (EKI57_06790) - 1230183..1230668 (+) 486 WP_000849582.1 antirestriction protein -
  EKI57_RS06795 (EKI57_06795) radC 1230684..1231160 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  EKI57_RS06800 (EKI57_06800) yeeT 1231229..1231450 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EKI57_RS06805 (EKI57_06805) - 1231613..1231981 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EKI57_RS06810 (EKI57_06810) - 1232071..1232448 (+) 378 WP_000854757.1 TA system toxin CbtA family protein -
  EKI57_RS06815 (EKI57_06815) - 1232445..1232594 (+) 150 Protein_1326 DUF5983 family protein -
  EKI57_RS06820 (EKI57_06820) - 1232694..1232774 (+) 81 Protein_1327 hypothetical protein -
  EKI57_RS30705 - 1233590..1233961 (+) 372 WP_001295631.1 IS110 family transposase -
  EKI57_RS30710 - 1234232..1234597 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  EKI57_RS06840 (EKI57_06840) tmaR 1234698..1235027 (-) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=309018 EKI57_RS06795 WP_001186725.1 1230684..1231160(+) (radC) [Escherichia coli strain CFSAN027343]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=309018 EKI57_RS06795 WP_001186725.1 1230684..1231160(+) (radC) [Escherichia coli strain CFSAN027343]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment