Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EKI55_RS24245 Genome accession   NZ_CP037941
Coordinates   4753859..4754374 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN027350     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4748859..4759374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI55_RS24220 (EKI55_24220) ygaZ 4749258..4749995 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EKI55_RS24225 (EKI55_24225) ygaH 4749985..4750320 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EKI55_RS24230 (EKI55_24230) emrR 4750411..4750941 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EKI55_RS24235 (EKI55_24235) emrA 4751068..4752240 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EKI55_RS24240 (EKI55_24240) emrB 4752257..4753795 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EKI55_RS24245 (EKI55_24245) luxS 4753859..4754374 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  EKI55_RS24250 (EKI55_24250) gshA 4754524..4756080 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EKI55_RS24255 (EKI55_24255) yqaA 4756153..4756581 (-) 429 WP_001287457.1 YqaA family protein -
  EKI55_RS24260 (EKI55_24260) yqaB 4756578..4757144 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EKI55_RS24290 (EKI55_24290) csrA 4758469..4758654 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=308995 EKI55_RS24245 WP_001130207.1 4753859..4754374(-) (luxS) [Escherichia coli strain CFSAN027350]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=308995 EKI55_RS24245 WP_001130207.1 4753859..4754374(-) (luxS) [Escherichia coli strain CFSAN027350]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731