Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EKI55_RS20055 Genome accession   NZ_CP037941
Coordinates   3924649..3925149 (+) Length   166 a.a.
NCBI ID   WP_133374437.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN027350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3919649..3930149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI55_RS20020 (EKI55_20020) - 3920104..3920454 (+) 351 Protein_3862 IrmA family protein -
  EKI55_RS20025 (EKI55_20025) - 3920533..3920766 (+) 234 WP_001119729.1 DUF905 family protein -
  EKI55_RS20035 (EKI55_20035) - 3920866..3921243 (+) 378 Protein_3864 DUF932 domain-containing protein -
  EKI55_RS20040 (EKI55_20040) - 3921756..3923534 (+) 1779 WP_001243195.1 reverse transcriptase/maturase family protein -
  EKI55_RS20045 (EKI55_20045) - 3923653..3924093 (+) 441 Protein_3866 DUF932 domain-containing protein -
  EKI55_RS20050 (EKI55_20050) - 3924148..3924633 (+) 486 WP_000849582.1 antirestriction protein -
  EKI55_RS20055 (EKI55_20055) radC 3924649..3925149 (+) 501 WP_133374437.1 RadC family protein Machinery gene
  EKI55_RS20060 (EKI55_20060) - 3925153..3926724 (-) 1572 WP_000381416.1 IS66 family transposase -
  EKI55_RS20065 (EKI55_20065) tnpB 3926744..3927091 (-) 348 WP_000624618.1 IS66 family insertion sequence element accessory protein TnpB -
  EKI55_RS20070 (EKI55_20070) tnpA 3927091..3927741 (-) 651 WP_000993931.1 IS66-like element accessory protein TnpA -
  EKI55_RS20075 (EKI55_20075) yeeT 3927906..3928127 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EKI55_RS20080 (EKI55_20080) - 3928290..3928658 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EKI55_RS20085 (EKI55_20085) - 3928748..3929125 (+) 378 WP_000854757.1 TA system toxin CbtA family protein -
  EKI55_RS20090 (EKI55_20090) - 3929122..3929271 (+) 150 Protein_3875 DUF5983 family protein -
  EKI55_RS20095 (EKI55_20095) - 3929371..3929451 (+) 81 Protein_3876 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18535.22 Da        Isoelectric Point: 6.7000

>NTDB_id=308985 EKI55_RS20055 WP_133374437.1 3924649..3925149(+) (radC) [Escherichia coli strain CFSAN027350]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLLVS
DSPEPY

Nucleotide


Download         Length: 501 bp        

>NTDB_id=308985 EKI55_RS20055 WP_133374437.1 3924649..3925149(+) (radC) [Escherichia coli strain CFSAN027350]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTGTAAGC
GACTCGCCAGAACCGTATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

68.072

0.38

Multiple sequence alignment