Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EKI55_RS12525 Genome accession   NZ_CP037941
Coordinates   2554198..2554827 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain CFSAN027350     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2549198..2559827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI55_RS12505 (EKI55_12505) ycbZ 2549600..2551360 (-) 1761 WP_032344991.1 Lon protease family protein -
  EKI55_RS12510 (EKI55_12510) matP 2551546..2551998 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EKI55_RS12515 (EKI55_12515) ompA 2552073..2553113 (-) 1041 WP_000750416.1 porin OmpA -
  EKI55_RS12520 (EKI55_12520) sulA 2553470..2553979 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EKI55_RS12525 (EKI55_12525) sxy/tfoX 2554198..2554827 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EKI55_RS12530 (EKI55_12530) yccS 2554790..2556952 (-) 2163 WP_000875023.1 YccS family putative transporter -
  EKI55_RS12535 (EKI55_12535) yccF 2556962..2557408 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EKI55_RS12540 (EKI55_12540) helD 2557531..2559585 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=308973 EKI55_RS12525 WP_000839153.1 2554198..2554827(+) (sxy/tfoX) [Escherichia coli strain CFSAN027350]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=308973 EKI55_RS12525 WP_000839153.1 2554198..2554827(+) (sxy/tfoX) [Escherichia coli strain CFSAN027350]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment