Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EKI55_RS03225 Genome accession   NZ_CP037941
Coordinates   663453..664121 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain CFSAN027350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 658453..669121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI55_RS03195 (EKI55_03195) yicC 658472..659335 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  EKI55_RS03200 (EKI55_03200) rph 659462..660178 (+) 717 WP_001247089.1 ribonuclease PH -
  EKI55_RS03205 (EKI55_03205) pyrE 660244..660885 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  EKI55_RS03210 (EKI55_03210) slmA 660922..661518 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EKI55_RS03215 (EKI55_03215) dut 661625..662083 (-) 459 WP_000976070.1 dUTP diphosphatase -
  EKI55_RS03220 (EKI55_03220) coaBC 662061..663281 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EKI55_RS03225 (EKI55_03225) radC 663453..664121 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  EKI55_RS03230 (EKI55_03230) rpmB 664338..664574 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  EKI55_RS03235 (EKI55_03235) rpmG 664595..664762 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  EKI55_RS03240 (EKI55_03240) mutM 664860..665669 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EKI55_RS03245 (EKI55_03245) coaD 665708..666187 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  EKI55_RS03250 (EKI55_03250) waaA 666195..667472 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EKI55_RS03255 (EKI55_03255) rfaQ 667885..668943 (+) 1059 WP_000360406.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=308949 EKI55_RS03225 WP_001297375.1 663453..664121(+) (radC) [Escherichia coli strain CFSAN027350]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=308949 EKI55_RS03225 WP_001297375.1 663453..664121(+) (radC) [Escherichia coli strain CFSAN027350]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment