Detailed information NTG0308845

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CKAES1R_RS06880
• Genome accession: NZ_CP037926
• Coordinates: 1438606..1439610 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain AES1R
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1433606..1444610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKAES1R_RS06850 (CKAES1R_01360)	fghA	1433698..1434549 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
CKAES1R_RS06855 (CKAES1R_01361)	ispF	1434620..1435093 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CKAES1R_RS06860 (CKAES1R_01362)	truD	1435090..1436157 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
CKAES1R_RS06865 (CKAES1R_01363)	surE	1436145..1436894 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CKAES1R_RS06870 (CKAES1R_01364)	-	1436927..1437562 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CKAES1R_RS06875 (CKAES1R_01365)	-	1437608..1438501 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
CKAES1R_RS06880 (CKAES1R_01366)	rpoS	1438606..1439610 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CKAES1R_RS06885 (CKAES1R_01367)	fdxA	1440037..1440360 (-)	324	WP_003119354.1	ferredoxin FdxA	-
CKAES1R_RS06890 (CKAES1R_01368)	mutS	1440427..1442994 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
CKAES1R_RS06900 (CKAES1R_01369)	-	1443119..1444126 (-)	1008	WP_019682219.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=308845 CKAES1R_RS06880 WP_003113871.1 1438606..1439610(+) (rpoS) [Pseudomonas aeruginosa strain AES1R]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=308845 CKAES1R_RS06880 WP_003113871.1 1438606..1439610(+) (rpoS) [Pseudomonas aeruginosa strain AES1R]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653