Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CKAES1M_RS05425 Genome accession   NZ_CP037925
Coordinates   1130540..1131982 (+) Length   480 a.a.
NCBI ID   WP_054377992.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AES1M     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1125540..1136982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKAES1M_RS05405 (CKAES1M_01064) - 1126208..1127779 (-) 1572 WP_019681897.1 DUF4129 domain-containing protein -
  CKAES1M_RS05410 (CKAES1M_01065) - 1127766..1128746 (-) 981 WP_003134640.1 stage II sporulation protein M -
  CKAES1M_RS05415 (CKAES1M_01066) - 1128743..1129540 (-) 798 WP_019681896.1 RDD family protein -
  CKAES1M_RS05420 (CKAES1M_01067) - 1129578..1130315 (-) 738 WP_019681895.1 hypothetical protein -
  CKAES1M_RS05425 (CKAES1M_01068) sbcB 1130540..1131982 (+) 1443 WP_054377992.1 exodeoxyribonuclease I Machinery gene
  CKAES1M_RS05430 (CKAES1M_01069) mvaT 1132067..1132441 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  CKAES1M_RS05435 (CKAES1M_01070) purU 1132701..1133552 (+) 852 WP_019682321.1 formyltetrahydrofolate deformylase -
  CKAES1M_RS05440 (CKAES1M_01071) - 1133602..1133814 (+) 213 WP_003101176.1 hypothetical protein -
  CKAES1M_RS05445 (CKAES1M_01072) - 1133789..1134790 (-) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  CKAES1M_RS05450 (CKAES1M_01073) - 1134787..1135548 (-) 762 WP_054377991.1 DUF2334 domain-containing protein -
  CKAES1M_RS05455 (CKAES1M_01074) - 1135541..1136656 (-) 1116 WP_019682856.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55467.72 Da        Isoelectric Point: 5.5542

>NTDB_id=308751 CKAES1M_RS05425 WP_054377992.1 1130540..1131982(+) (sbcB) [Pseudomonas aeruginosa strain AES1M]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQSATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRGEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=308751 CKAES1M_RS05425 WP_054377992.1 1130540..1131982(+) (sbcB) [Pseudomonas aeruginosa strain AES1M]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGTCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGTAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGGCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.176

88.542

0.435

Multiple sequence alignment