Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E1J56_RS20845 Genome accession   NZ_CP037910
Coordinates   4232211..4232687 (+) Length   158 a.a.
NCBI ID   WP_001186780.1    Uniprot ID   -
Organism   Escherichia coli strain YSP8-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4227211..4237687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J56_RS20815 - 4227949..4228833 (+) 885 WP_000010408.1 GTPase -
  E1J56_RS20820 - 4229036..4229716 (+) 681 WP_001282919.1 WYL domain-containing protein -
  E1J56_RS20825 - 4229864..4230541 (+) 678 WP_063073422.1 hypothetical protein -
  E1J56_RS20830 - 4230547..4230699 (+) 153 WP_001696589.1 DUF905 family protein -
  E1J56_RS20835 - 4230800..4231618 (+) 819 WP_096211214.1 DUF932 domain-containing protein -
  E1J56_RS20840 - 4231710..4232195 (+) 486 WP_000213716.1 antirestriction protein -
  E1J56_RS20845 radC 4232211..4232687 (+) 477 WP_001186780.1 RadC family protein Machinery gene
  E1J56_RS20850 - 4232750..4232971 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  E1J56_RS20855 - 4232990..4233634 (+) 645 WP_045146861.1 hypothetical protein -
  E1J56_RS20860 - 4233684..4234052 (+) 369 WP_063112944.1 type IV toxin-antitoxin system YeeU family antitoxin -
  E1J56_RS20865 - 4234142..4234519 (+) 378 WP_057109034.1 TA system toxin CbtA family protein -
  E1J56_RS20870 - 4234516..4234665 (+) 150 Protein_4092 DUF5983 family protein -
  E1J56_RS20875 - 4234741..4234938 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  E1J56_RS20880 - 4235023..4235865 (+) 843 WP_001529559.1 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.21 Da        Isoelectric Point: 6.9859

>NTDB_id=308705 E1J56_RS20845 WP_001186780.1 4232211..4232687(+) (radC) [Escherichia coli strain YSP8-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHESGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=308705 E1J56_RS20845 WP_001186780.1 4232211..4232687(+) (radC) [Escherichia coli strain YSP8-1]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAGTCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment