Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E1J56_RS16845 Genome accession   NZ_CP037910
Coordinates   3431348..3431953 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain YSP8-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3426348..3436953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J56_RS16825 aes 3426489..3427448 (+) 960 WP_000801812.1 acetyl esterase -
  E1J56_RS16830 hemH 3427445..3428407 (-) 963 WP_001250103.1 ferrochelatase -
  E1J56_RS16835 adk 3428539..3429183 (-) 645 WP_001220233.1 adenylate kinase -
  E1J56_RS16840 htpG 3429364..3431238 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  E1J56_RS16845 recR 3431348..3431953 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E1J56_RS16850 ybaB 3431953..3432282 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E1J56_RS16855 dnaX 3432335..3434266 (-) 1932 WP_024197998.1 DNA polymerase III subunit gamma/tau -
  E1J56_RS16860 apt 3434395..3434946 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  E1J56_RS16865 ybaN 3435099..3435476 (-) 378 WP_001188905.1 DUF454 family protein -
  E1J56_RS16870 priC 3435546..3436073 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  E1J56_RS16875 rsmS 3436087..3436248 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=308694 E1J56_RS16845 WP_001195025.1 3431348..3431953(-) (recR) [Escherichia coli strain YSP8-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=308694 E1J56_RS16845 WP_001195025.1 3431348..3431953(-) (recR) [Escherichia coli strain YSP8-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443