Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E1J56_RS05335 Genome accession   NZ_CP037910
Coordinates   1098752..1099267 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain YSP8-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093752..1104267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J56_RS05290 csrA 1094339..1094524 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  E1J56_RS05320 yqaB 1095982..1096548 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E1J56_RS05325 yqaA 1096545..1096973 (+) 429 WP_001287454.1 YqaA family protein -
  E1J56_RS05330 gshA 1097046..1098602 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  E1J56_RS05335 luxS 1098752..1099267 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  E1J56_RS05340 emrB 1099331..1100869 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  E1J56_RS05345 emrA 1100886..1102058 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E1J56_RS05350 emrR 1102185..1102715 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E1J56_RS05355 ygaH 1102806..1103141 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  E1J56_RS05360 ygaZ 1103131..1103868 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=308666 E1J56_RS05335 WP_001130211.1 1098752..1099267(+) (luxS) [Escherichia coli strain YSP8-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=308666 E1J56_RS05335 WP_001130211.1 1098752..1099267(+) (luxS) [Escherichia coli strain YSP8-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731