Detailed information NTG0308663

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E1J56_RS05055
• Genome accession: NZ_CP037910
• Coordinates: 1045933..1046925 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain YSP8-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1040933..1051925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1J56_RS05025	ispD	1040994..1041704 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E1J56_RS05030	ispF	1041704..1042183 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E1J56_RS05035	truD	1042180..1043229 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
E1J56_RS05040	surE	1043210..1043971 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E1J56_RS05045	pcm	1043965..1044591 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E1J56_RS05050	nlpD	1044776..1045870 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
E1J56_RS05055	rpoS	1045933..1046925 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E1J56_RS05060	ygbN	1047019..1048383 (-)	1365	WP_021547117.1	GntP family transporter	-
E1J56_RS05065	ygbM	1048472..1049248 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
E1J56_RS05070	ygbL	1049253..1049891 (-)	639	WP_001278994.1	aldolase	-
E1J56_RS05075	otnK	1049888..1051150 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=308663 E1J56_RS05055 WP_000081550.1 1045933..1046925(+) (rpoS) [Escherichia coli strain YSP8-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=308663 E1J56_RS05055 WP_000081550.1 1045933..1046925(+) (rpoS) [Escherichia coli strain YSP8-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715