Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E1J55_RS18120 Genome accession   NZ_CP037903
Coordinates   3728361..3728837 (-) Length   158 a.a.
NCBI ID   WP_001186745.1    Uniprot ID   -
Organism   Escherichia coli strain LHM10-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3723361..3733837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J55_RS18080 - 3723469..3724788 (+) 1320 WP_105284452.1 site-specific integrase -
  E1J55_RS18085 - 3724881..3725729 (-) 849 WP_039025884.1 DUF4942 domain-containing protein -
  E1J55_RS18090 - 3725826..3726023 (-) 198 WP_000772024.1 DUF957 domain-containing protein -
  E1J55_RS18095 - 3726043..3726531 (-) 489 Protein_3545 DUF5983 family protein -
  E1J55_RS18100 cbtA 3726528..3726905 (-) 378 WP_039025883.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  E1J55_RS18105 - 3726994..3727362 (-) 369 WP_039025882.1 type IV toxin-antitoxin system YeeU family antitoxin -
  E1J55_RS18110 - 3727412..3728056 (-) 645 WP_136698443.1 antitoxin of toxin-antitoxin stability system -
  E1J55_RS18115 - 3728071..3728292 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  E1J55_RS18120 radC 3728361..3728837 (-) 477 WP_001186745.1 RadC family protein Machinery gene
  E1J55_RS18125 - 3728852..3729337 (-) 486 WP_000214316.1 antirestriction protein -
  E1J55_RS18130 - 3729428..3730246 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  E1J55_RS18140 - 3730573..3733419 (-) 2847 WP_136698444.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17670.27 Da        Isoelectric Point: 6.9859

>NTDB_id=308620 E1J55_RS18120 WP_001186745.1 3728361..3728837(-) (radC) [Escherichia coli strain LHM10-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=308620 E1J55_RS18120 WP_001186745.1 3728361..3728837(-) (radC) [Escherichia coli strain LHM10-1]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment