Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E1J55_RS18060 Genome accession   NZ_CP037903
Coordinates   3721472..3721948 (+) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli strain LHM10-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3716472..3726948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J55_RS18020 - 3716679..3717542 (+) 864 WP_136698439.1 GTPase family protein -
  E1J55_RS18025 - 3717634..3718455 (+) 822 WP_136698440.1 DUF932 domain-containing protein -
  E1J55_RS18030 yfjR 3718672..3719373 (+) 702 WP_136698441.1 WYL domain-containing protein -
  E1J55_RS18035 ypjK 3719414..3719650 (+) 237 WP_001144031.1 protein YpjK -
  E1J55_RS18040 yfjS 3719650..3720093 (+) 444 WP_029039038.1 YfjS/YafY family lipoprotein -
  E1J55_RS18045 ykfB 3720117..3720584 (+) 468 WP_136698442.1 protein YkfB -
  E1J55_RS18050 ykfF 3720661..3720900 (+) 240 WP_000194654.1 DUF905 family protein -
  E1J55_RS18055 - 3720998..3721456 (+) 459 WP_000211838.1 antirestriction protein -
  E1J55_RS18060 radC 3721472..3721948 (+) 477 WP_000811693.1 RadC family protein Machinery gene
  E1J55_RS18065 - 3721957..3722178 (+) 222 WP_000691994.1 DUF987 domain-containing protein -
  E1J55_RS18070 yafW 3722197..3722514 (+) 318 WP_000070396.1 type IV toxin-antitoxin system antitoxin YafW -
  E1J55_RS18075 ykfI 3722535..3722876 (+) 342 WP_000854680.1 type IV toxin-antitoxin system toxin YkfI -
  E1J55_RS18080 - 3723469..3724788 (+) 1320 WP_105284452.1 site-specific integrase -
  E1J55_RS18085 - 3724881..3725729 (-) 849 WP_039025884.1 DUF4942 domain-containing protein -
  E1J55_RS18090 - 3725826..3726023 (-) 198 WP_000772024.1 DUF957 domain-containing protein -
  E1J55_RS18095 - 3726043..3726531 (-) 489 Protein_3545 DUF5983 family protein -
  E1J55_RS18100 cbtA 3726528..3726905 (-) 378 WP_039025883.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=308619 E1J55_RS18060 WP_000811693.1 3721472..3721948(+) (radC) [Escherichia coli strain LHM10-1]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=308619 E1J55_RS18060 WP_000811693.1 3721472..3721948(+) (radC) [Escherichia coli strain LHM10-1]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment