Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E1J55_RS16975 Genome accession   NZ_CP037903
Coordinates   3492348..3492953 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain LHM10-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3487348..3497953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J55_RS16955 aes 3487489..3488448 (+) 960 WP_000801796.1 acetyl esterase -
  E1J55_RS16960 hemH 3488445..3489407 (-) 963 WP_001250107.1 ferrochelatase -
  E1J55_RS16965 adk 3489539..3490183 (-) 645 WP_001220233.1 adenylate kinase -
  E1J55_RS16970 htpG 3490364..3492238 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  E1J55_RS16975 recR 3492348..3492953 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E1J55_RS16980 ybaB 3492953..3493282 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E1J55_RS16985 dnaX 3493335..3495266 (-) 1932 WP_136698409.1 DNA polymerase III subunit gamma/tau -
  E1J55_RS16990 apt 3495395..3495946 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  E1J55_RS16995 ybaN 3496099..3496476 (-) 378 WP_001188905.1 DUF454 family protein -
  E1J55_RS17000 priC 3496546..3497073 (+) 528 WP_136698410.1 primosomal replication protein N'' -
  E1J55_RS17005 rsmS 3497087..3497248 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  E1J55_RS25985 - 3497301..3497399 (-) 99 Protein_3326 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=308614 E1J55_RS16975 WP_001195025.1 3492348..3492953(-) (recR) [Escherichia coli strain LHM10-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=308614 E1J55_RS16975 WP_001195025.1 3492348..3492953(-) (recR) [Escherichia coli strain LHM10-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment